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2023

• Darki F, Ferrario A, Rankin J. (2023) Hierarchical processing underpins competition in tactile perceptual bistability, J Comput Neurosci, DOI:10.1007/s10827-023-00852-0. [PDF]
• Tsaneva-Atanasova K, Scotton C. (2023) How to handle big data for disease stratification in respiratory medicine?, Thorax, DOI:10.1136/thorax-2023-220138.
• Giuraniuc C, Parkin C, Almeida M, Fricker M, Shadmani P, Nye S, Wehmeier S, Chawla S, Bedekovic T, Lehtovirta-Morley L. (2023) Dynamic calcium-mediated stress response and recovery signatures in the fungal pathogen, Candida albicans, DOI:10.1101/2023.04.20.537637.
• Evans JO, Tsaneva-Atanasova K, Buckingham G. (2023) Using immersive virtual reality to remotely examine performance differences between dominant and non-dominant hands, Virtual Reality, DOI:10.1007/s10055-023-00794-z.
• Zhang B, Phetsang W, Stone MRL, Kc S, Butler MS, Cooper MA, Elliott AG, Łapińska U, Voliotis M, Tsaneva-Atanasova K. (2023) Synthesis of vancomycin fluorescent probes that retain antimicrobial activity, identify Gram-positive bacteria, and detect Gram-negative outer membrane damage, Commun Biol, volume 6, no. 1, DOI:10.1038/s42003-023-04745-x. [PDF]
• Dunstan DM, Richardson MP, Abela E, Akman OE, Goodfellow M. (2023) Global nonlinear approach for mapping parameters of neural mass models, PLoS Comput Biol, volume 19, no. 3, DOI:10.1371/journal.pcbi.1010985. [PDF]
• Guel-Cortez AJ, Kim EJ. (2023) Relations between entropy rate, entropy production and information geometry in linear stochastic systems, Journal of Statistical Mechanics: Theory and Experiment, volume 2023, no. 3, DOI:10.1088/1742-5468/acbc24.
• Galvis D, Hodson DJ, Wedgwood KCA. (2023) Spatial distribution of heterogeneity as a modulator of collective dynamics in pancreatic beta-cell networks and beyond, Frontiers in Network Physiology, volume 3, DOI:10.3389/fnetp.2023.1170930.
• Bondoc-Naumovitz KG, Laeverenz-Schlogelhofer H, Poon RN, Boggon AK, Bentley SA, Cortese D, Wan KY. (2023) Methods and measures for investigating microscale motility. [PDF]
• Hembrow J, Deeks MJ, Richards DM. (2023) AUTOMATIC EXTRACTION OF ACTIN NETWORKS IN PLANTS, DOI:10.1101/2023.01.18.524528.
• Gramegna A, Narayana JK, Amati F, Stainer A, Wu B, Morlacchi LC, Segal LN, Tsaneva-Atanasova K, Marchisio P, Chotirmall SH. (2023) Microbial Inflammatory Networks in Bronchiectasis Exacerbators With Pseudomonas aeruginosa, Chest, DOI:10.1016/j.chest.2023.02.014.
• Blyth M, Tsaneva-Atanasova K, Marucci L, Renson L. (2023) Numerical methods for control-based continuation of relaxation oscillations, Nonlinear Dynamics, volume 111, no. 9, pages 7975-7992, DOI:10.1007/s11071-023-08288-y.
• Ferrario A, Saccomanno V, Zhang H-Y, Borisyuk R, Li W-C. (2023) Mechanisms Underlying the Recruitment of Inhibitory Interneurons in Fictive Swimming in Developing Xenopus laevis Tadpoles, J Neurosci, volume 43, no. 8, pages 1387-1404, DOI:10.1523/JNEUROSCI.0520-22.2022. [PDF]
• Erhardt AH, Tsaneva-Atanasova K, Lines GT, Martens EA. (2023) Editorial: Dynamical systems, PDEs and networks for biomedical applications: Mathematical modeling, analysis and simulations, Frontiers in Physics, volume 10, DOI:10.3389/fphy.2022.1101756.
• Richards D, Cockerell A, Wright L, Dattani A, Guo G, Smith A, Tsaneva K. (2023) Biophysical models of early mammalian embryogenesis, Stem Cell Reports, volume 18, pages 26-46, DOI:10.1016/j.stemcr.2022.11.021.
• Narayana JK, Aliberti S, Mac Aogáin M, Jaggi TK, Ali NABM, Ivan FX, Cheng HS, Yip YS, Vos MIG, Low ZS. (2023) Microbial Dysregulation of the Gut-Lung Axis in Bronchiectasis, American Journal of Respiratory and Critical Care Medicine, volume 207, no. 7, pages 908-920, DOI:10.1164/rccm.202205-0893oc.
• Ashwin P, Creaser J, Tsaneva-Atanasova K. (2023) Quasipotentials for coupled escape problems and the gate-height bifurcation, Phys Rev E, volume 107, no. 1-1, DOI:10.1103/PhysRevE.107.014213. [PDF]
• Tiew PY, Narayana JK, Quek MSL, Ang YY, Ko FWS, Poh ME, Jaggi TK, Xu H, Thng KX, Koh MS. (2023) Sensitisation to recombinantAspergillus fumigatusallergens and clinical outcomes in COPD, European Respiratory Journal, volume 61, no. 1, pages 2200507-2200507, DOI:10.1183/13993003.00507-2022.
• Slowinski P, Grindley B, Muncie H, Harris D, Vine S, Wilson M. (2023) Assessment of cognitive biases in Augmented Reality: Beyond eye tracking (dataset), DOI:10.24378/exe.4064. [PDF]

2022

• Bentley S, Laeverenz Schlogelhofer H, Anagnostidis V, Cammann J, Mazza M, Gielen F, Wan Y. (2022) Dataset: Phenotyping single cell motility in microfluidic confinement, DOI:10.5281/zenodo.7226288. [PDF]
• Guel-Cortez A-J, Kim E-J. (2022) Information Geometry Control under the Laplace Assumption, MaxEnt 2022, MaxEnt 2022, DOI:10.3390/psf2022005025.
• Guel-Cortez A-J, Méndez-Barrios C-F, Torres-García D, Félix L. (2022) Further Remarks on Irrational Systems and Their Applications, MWFC 2022, The 5th Mexican Workshop on Fractional Calculus, DOI:10.3390/cmsf2022004005.
• Cortez AJG, Kim EJ. (2022) Model Reduction and Control Design of a Multi-agent Line Formation of Mobile Robots, Lecture Notes in Networks and Systems, volume 297, pages 197-207, DOI:10.1007/978-3-030-82064-0_16.
• Hernández-Gallardo JA, González-Galván EJ, Méndez-Barrios CF, Guel-Cortez AJ. (2022) Fastest with No-Overshoot Velocity Control Design of a Two-Differential Robotic Formation, Lecture Notes in Networks and Systems, volume 347 LNNS, pages 71-79, DOI:10.1007/978-3-030-90033-5_9.
• Hernández-Gallardo JA, Méndez-Barrios CF, Guel-Cortez AJ, Gonzalez-Galvan EJ. (2022) N-groups formation of differential robots, Proceedings of the 24th Robotics Mexican Congress, COMRob 2022, pages 54-59, DOI:10.1109/COMRob57154.2022.9962309.
• Chamorro HR, Arrieta Paternina MR, Guel-Cortez AJ, Obando G, Sood VK, Kamwa I. (2022) Power Systems Coherency Representation and Identification as Particles, Proceedings of International Conference on Smart Systems and Technologies, SST 2022, pages 61-66, DOI:10.1109/SST55530.2022.9954878.
• Adams S, Voliotis M, Phylactou M, Izzi-Engbeaya C, Mills E, Thurston L, Hanassab S, Tsaneva-Atanasova K, Heinis T, Comninos A. (2022) Quantifying the Variability in the Outpatient Assessment of Reproductive Hormone levels, Endocrine Abstracts, DOI:10.1530/endoabs.86.p117.
• Voliotis M, Abbara A, Prague JK, Veldhuis JD, Dhilo WS, Tsaneva-Atanasova K. (2022) LBMON233 Hormonebayes: A Novel Bayesian Toolbox For Analysis Of Pulsatile Hormone Dynamics, Journal of the Endocrine Society, volume 6, no. Suppl 1, pages a648-a649, DOI:10.1210/jendso/bvac150.1341.
• Bentley SA, Laeverenz-Schlogelhofer H, Anagnostidis V, Cammann J, Mazza MG, Gielen F, Wan KY. (2022) Phenotyping single-cell motility in microfluidic confinement, eLife, volume 11, DOI:10.7554/elife.76519.
• Chamorro HR, Guel-Cortez A, Kim E-J, Gonzalez-Longatt F, Ortega A, Martinez W. (2022) Information Length Quantification and Forecasting of Power Systems Kinetic Energy, IEEE TRANSACTIONS ON POWER SYSTEMS, volume 37, no. 6, pages 4473-4484, DOI:10.1109/TPWRS.2022.3146314. [PDF]
• Lass G, Li XF, Voliotis M, Wall E, de Burgh RA, Ivanova D, McIntyre C, Lin X, Colledge WH, Lightman SL. (2022) GnRH pulse generator frequency is modulated by kisspeptin and GABA ‐glutamate interactions in the posterodorsal medial amygdala in female mice, Journal of Neuroendocrinology, volume 34, no. 11, DOI:10.1111/jne.13207.
• Voliotis M, Hanassab S, Abbara A, Heinis T, Dhillo WS, Tsaneva-Atanasova K. (2022) Quantitative approaches in clinical reproductive endocrinology, Current Opinion in Endocrine and Metabolic Research, volume 27, pages 100421-100421, article no. 100421, DOI:10.1016/j.coemr.2022.100421.
• Poon RN, Westwood TA, Laeverenz-Schlogelhofer H, Brodrick E, Craggs J, Keaveny EE, Jékely G, Wan KY. (2022) Ciliary propulsion and metachronal coordination in reef coral larvae, DOI:10.1101/2022.09.19.508546.
• Woodhams L, Cortese D, Bayly P, Wan Y. (2022) Physics and mechanics of ciliary beating: The Chlamydomonas Sourcebook.
• Plain Z, Voliotis M, McArdle CA, Tsaneva-Atanasova K. (2022) Modelling KNDy neurons and gonadotropin-releasing hormone pulse generation, Current Opinion in Endocrine and Metabolic Research, volume 27, pages 100407-100407, article no. 100407, DOI:10.1016/j.coemr.2022.100407.
• Voliotis M, Rosko J, Pilizota T, Liverpool TB. (2022) Steady-state running rate sets the speed and accuracy of accumulation of swimming bacteria, Biophys J, volume 121, no. 18, pages 3435-3444, DOI:10.1016/j.bpj.2022.08.012. [PDF]
• Challen R. (2022) Addressing local and national priorities for health data science research during the COVID-19 pandemic.
• Goodfellow M, Andrzejak RG, Masoller C, Lehnertz K. (2022) What Models and Tools can Contribute to a Better Understanding of Brain Activity?, Frontiers in Network Physiology, volume 2, DOI:10.3389/fnetp.2022.907995.
• Woodward K, Apps R, Goodfellow M, Cerminara NL. (2022) Cerebello-Thalamo-Cortical Network Dynamics in the Harmaline Rodent Model of Essential Tremor, Frontiers in Systems Neuroscience, volume 16, DOI:10.3389/fnsys.2022.899446.
• Challen RJ, Griffith GJ, Lacasa L, Tsaneva-Atanasova K. (2022) Algorithmic hospital catchment area estimation using label propagation, BMC Health Services Research, volume 22, no. 1, article no. 828, DOI:10.1186/s12913-022-08127-7.
• Słowiński P, Grindley B, Muncie H, Harris D, Vine S, Wilson M. (2022) Assessment of cognitive biases in augmented reality: Beyond eye tracking, Journal of Eye Movement Research, volume 15, no. 3, DOI:10.16910/jemr.15.3.4.
• Łapińska U, Voliotis M, Lee KK, Campey A, Stone MRL, Tuck B, Phetsang W, Zhang B, Tsaneva-Atanasova K, Blaskovich MAT. (2022) Fast bacterial growth reduces antibiotic accumulation and efficacy, eLife, volume 11, DOI:10.7554/elife.74062.
• Spencer APC, Goodfellow M. (2022) Using deep clustering to improve fMRI dynamic functional connectivity analysis, Neuroimage, volume 257, DOI:10.1016/j.neuroimage.2022.119288. [PDF]
• Narayana JK, Tsaneva-Atanasova K, Chotirmall SH. (2022) Microbiomics-focused Data Integration: A Fresh Solve for the Rubik’s Cube of Endophenotyping?, American Journal of Respiratory and Critical Care Medicine, volume 206, no. 4, pages 365-368, DOI:10.1164/rccm.202205-0860ed.
• Cortese D, Wan KY. (2022) Distinct gaits of self-propelled quadriflagellate microswimmers, DOI:10.1101/2022.05.10.491287.
• Chavane F, Perrinet LU, Rankin J. (2022) Revisiting horizontal connectivity rules in V1: from like-to-like towards like-to-all, Brain Structure and Function, volume 227, no. 4, pages 1279-1295, DOI:10.1007/s00429-022-02455-4.
• Glover G, Voliotis M, Łapińska U, Invergo BM, Soanes D, O’Neill P, Moore K, Nikolic N, Petrov PG, Milner DS. (2022) Nutrient and salt depletion synergistically boosts glucose metabolism in individual Escherichia coli cells, Communications Biology, volume 5, no. 1, article no. 385, DOI:10.1038/s42003-022-03336-6.
• Wan KY. (2022) The beat of isolated cilia, Nature Physics, volume 18, no. 3, pages 234-235, DOI:10.1038/s41567-022-01502-5.
• Pinion J, Walsh C, Goodfellow M, Randall AD, Tyler CR, Winter MJ. (2022) Differential Electrographic Signatures Generated by Mechanistically-Diverse Seizurogenic Compounds in the Larval Zebrafish Brain, eNeuro, volume 9, no. 2, DOI:10.1523/ENEURO.0337-21.2022. [PDF]
• Glover G, Voliotis M, Łapińska U, Invergo BM, Soanes D, O’Neill P, Moore K, Nikolic N, Petrov PG, Milner DS. (2022) Nutrient and salt depletion synergistically boosts glucose metabolism in individual bacteria, DOI:10.1101/2022.01.26.477826.
• Darki F. (2022) Neural dynamics of perceptual competition.
• Voliotis M, Plain Z, Li XF, McArdle CA, O’Byrne KT, Tsaneva‐Atanasova K. (2022) Mathematical models in GnRH research, Journal of Neuroendocrinology, volume 34, no. 5, DOI:10.1111/jne.13085.
• Galvis D, Hodson DJ, Wedgwood KCA. (2022) The influence of spatial configuration in collective transitions: the importance of being sorted. [PDF]
• Challen R, Brooks-Pollock E, Tsaneva-Atanasova K, Danon L. (2022) Meta-analysis of the severe acute respiratory syndrome coronavirus 2 serial intervals and the impact of parameter uncertainty on the coronavirus disease 2019 reproduction number, Statistical Methods in Medical Research, volume 31, no. 9, pages 1686-1703, DOI:10.1177/09622802211065159.
• Rankin J, Rinzel J. (2022) Attentional control via synaptic gain mechanisms in auditory streaming, Brain Res, volume 1778, DOI:10.1016/j.brainres.2021.147720. [PDF]

2021

• Guel-Cortez AJ, Méndez-Barrios CF, Kim EJ, Sen M. (2021) Fractional-order controllers for irrational systems, IET Control Theory and Applications, volume 15, no. 7, pages 965-977, DOI:10.1049/cth2.12095.
• Guel-Cortez AJ, Kim EJ. (2021) Information geometric theory in the prediction of abrupt changes in system dynamics, Entropy, volume 23, no. 6, DOI:10.3390/e23060694.
• Chamorro HR, Guel-Cortez AJ, Ordonez CA, Paternina MRA, Budisic M. (2021) On-line coherency analysis based on sliding-window Koopman mode decomposition, IEEE Green Technologies Conference, volume 2021-April, pages 484-488, DOI:10.1109/GreenTech48523.2021.00081.
• Kim EJ, Guel-Cortez AJ. (2021) Causal information rate, Entropy, volume 23, no. 8, DOI:10.3390/e23081087.
• Chamorro HR, Guel-Cortez AJ, Africano Y, Jimenez F, Tonkoski R, Martinez W. (2021) Grid Frequency Estimation based on Extended Kalman Filter in Connected AC Microgrids, IEEE International Symposium on Industrial Electronics, volume 2021-June, DOI:10.1109/ISIE45552.2021.9576275.
• Guel-Cortez AJ, Kim EJ. (2021) A Fractional-Order Model of the Cardiac Function, Springer Proceedings in Complexity, pages 273-285, DOI:10.1007/978-3-030-70795-8_21.
• Spencer APC, Goodfellow M. (2021) Using Deep Clustering to Improve fMRI Dynamic Functional Connectivity Analysis, DOI:10.1101/2021.12.14.472680.
• Chen X, Shen Y, Zavala E, Tsaneva-Atanasova K, Upton T, Russell G, Tino P. (2021) SOMiMS - Topographic Mapping in the Model Space, Intelligent Data Engineering and Automated Learning – IDEAL 2021 22nd International Conference, IDEAL 2021, Manchester, UK, November 25–27, 2021, Proceedings, Springer, 502-510.
• Balachandar AN, Khibnik A, Borisyuk R, Tabak J. (2021) Synaptic pulse duration determines phase difference between asymmetrically coupled oscillators, JOURNAL OF COMPUTATIONAL NEUROSCIENCE, volume 49, no. SUPPL 1, pages S176-S178. [PDF]
• Bentley SA, Anagnostidis V, Schlogelhofer HL, Gielen F, Wan KY. (2021) Phenotyping single-cell motility in microfluidic confinement, DOI:10.1101/2021.12.24.474109.
• Ferrario A, Palyanov A, Koutsikou S, Li W, Soffe S, Roberts A, Borisyuk R. (2021) From decision to action: Detailed modelling of frog tadpoles reveals neuronal mechanisms of decision-making and reproduces unpredictable swimming movements in response to sensory signals, PLoS Comput Biol, volume 17, no. 12, DOI:10.1371/journal.pcbi.1009654. [PDF]
• Narayana JK, Mac Aogáin M, Goh WWB, Xia K, Tsaneva-Atanasova K, Chotirmall SH. (2021) Mathematical-based microbiome analytics for clinical translation, Computational and Structural Biotechnology Journal, volume 19, pages 6272-6281, DOI:10.1016/j.csbj.2021.11.029.
• Ferrario A, Palyanov A, Koutsikou S, Li W, Soffe S, Roberts A, Borisyuk R. (2021) Whole animal modelling reveals neuronal mechanisms of decision-making and reproduces unpredictable swimming in frog tadpoles, DOI:10.1101/2021.07.13.452162.
• Voliotis M, Li XF, De Burgh R, Lass G, Ivanova D, McIntyre C, O’Byrne KT, Tsaneva-Atanasova K. (2021) Modulation of pulsatile GnRH dynamics across the ovarian cycle: the role of glutamatergic transmission in the arcuate kisspeptin network, DOI:10.1101/2021.03.22.436428.
• Voliotis M, Li XF, De Burgh RA, Lass G, Ivanova D, McIntyre C, O'Byrne K, Tsaneva-Atanasova K. (2021) Modulation of pulsatile GnRH dynamics across the ovarian cycle via changes in the network excitability and basal activity of the arcuate kisspeptin network, Elife, volume 10, DOI:10.7554/eLife.71252. [PDF]
• Spencer APC, Brooks JCW, Masuda N, Byrne H, Lee-Kelland R, Jary S, Thoresen M, Goodfellow M, Cowan FM, Chakkarapani E. (2021) Motor function and white matter connectivity in children cooled for neonatal encephalopathy, Neuroimage Clin, volume 32, DOI:10.1016/j.nicl.2021.102872. [PDF]
• Evans BD, Słowiński P, Hattersley AT, Jones SE, Sharp S, Kimmitt RA, Weedon MN, Oram RA, Tsaneva-Atanasova K, Thomas NJ. (2021) Estimating disease prevalence in large datasets using genetic risk scores, Nature Communications, volume 12, no. 1, article no. 6441, DOI:10.1038/s41467-021-26501-7. [PDF]
• Tait L, Lopes MA, Stothart G, Baker J, Kazanina N, Zhang J, Goodfellow M. (2021) A Large-Scale Brain Network Mechanism for Increased Seizure Propensity in Alzheimer’s Disease, DOI:10.1101/2021.01.19.427236.
• Spencer APC, Brooks JCW, Masuda N, Byrne H, Lee-Kelland R, Jary S, Thoresen M, Goodfellow M, Cowan FM, Chakkarapani E. (2021) Motor Function and White Matter Connectivity in Children Treated with Therapeutic Hypothermia for Neonatal Encephalopathy, DOI:10.1101/2021.04.30.21256369.
• Ferrario A, Rankin J. (2021) Cascades of Periodic Solutions in a Neural Circuit With Delays and Slow-Fast Dynamics, Frontiers in Applied Mathematics and Statistics, volume 7, DOI:10.3389/fams.2021.716288.
• Prince LY, Bacon T, Humphries R, Tsaneva-Atanasova K, Clopath C, Mellor JR. (2021) Separable actions of acetylcholine and noradrenaline on neuronal ensemble formation in hippocampal CA3 circuits, PLOS Computational Biology, volume 17, no. 10, pages e1009435-e1009435, DOI:10.1371/journal.pcbi.1009435.
• Kazanovich Y, Borisyuk R. (2021) A computational model of familiarity detection for natural pictures, abstract images, and random patterns: Combination of deep learning and anti-Hebbian training, Neural Netw, volume 143, pages 628-637, DOI:10.1016/j.neunet.2021.07.022. [PDF]
• Tait L, Lopes MA, Stothart G, Baker J, Kazanina N, Zhang J, Goodfellow M. (2021) A large-scale brain network mechanism for increased seizure propensity in Alzheimer’s disease, PLOS Computational Biology, volume 17, no. 8, pages e1009252-e1009252, DOI:10.1371/journal.pcbi.1009252.
• Diaz K, Robinson TL, Aydin YO, Aydin E, Goldman DI, Wan KY. (2021) A minimal robophysical model of quadriflagellate self-propulsion, Bioinspiration & Biomimetics, volume 16, no. 6, pages 066001-066001, DOI:10.1088/1748-3190/ac1b6e.
• Chaffey JR, Young J, Leslie KA, Partridge K, Akhbari P, Dhayal S, Hill JL, Wedgwood KCA, Burnett E, Russell MA. (2021) Investigation of the utility of the 1.1B4 cell as a model human beta cell line for study of persistent enteroviral infection, Sci Rep, volume 11, no. 1, DOI:10.1038/s41598-021-94878-y. [PDF]
• Gonzalez Herrero ME, Kuehn C, Tsaneva-Atanasova K. (2021) Reduced Models of Cardiomyocytes Excitability: Comparing Karma and FitzHugh–Nagumo, Bulletin of Mathematical Biology, volume 83, no. 8, pages 88-88, DOI:10.1007/s11538-021-00898-0. [PDF]
• Narayana JK, Aogáin MM, Ali NABM, Tsaneva-Atanasova K, Chotirmall SH. (2021) Similarity network fusion (SNF) for the integration of multi-omics and microbiomes in respiratory disease, European Respiratory Journal, DOI:10.1183/13993003.01016-2021. [PDF]
• Challen R, Tsaneva-Atanasova K, Pitt M, Edwards T, Gompels L, Lacasa L, Brooks-Pollock E, Danon L. (2021) Estimates of regional infectivity of COVID-19 in the United Kingdom following imposition of social distancing measures, Philosophical Transactions of the Royal Society B: Biological Sciences, volume 376, pages 20200280-20200280, article no. 1829, DOI:10.1098/rstb.2020.0280. [PDF]
• Zerenner T, Goodfellow M, Ashwin P. (2021) Harmonic cross-correlation decomposition for multivariate time series, Physical Review E: Statistical, Nonlinear, and Soft Matter Physics, DOI:10.1103/PhysRevE.103.062213.
• Mohammadi H, Challenor P, Goodfellow M. (2021) Emulating complex dynamical simulators with random Fourier features. [PDF]
• Ferrario A, Rankin J. (2021) Auditory streaming emerges from fast excitation and slow delayed inhibition, The Journal of Mathematical Neuroscience, volume 11, no. 1, article no. 8, DOI:10.1186/s13408-021-00106-2.
• Wan KY. (2021) A new kind of beat, eLife, volume 10, DOI:10.7554/elife.67701.
• Brunt L, Greicius G, Rogers S, Evans BD, Virshup DM, Wedgwood KCA, Scholpp S. (2021) Vangl2 promotes the formation of long cytonemes to enable distant Wnt/β-catenin signaling, Nat Commun, volume 12, no. 1, DOI:10.1038/s41467-021-22393-9. [PDF]
• Mac Aogáin M, Narayana JK, Tiew PY, Ali NABM, Yong VFL, Jaggi TK, Lim AYH, Keir HR, Dicker AJ, Thng KX. (2021) Integrative microbiomics in bronchiectasis exacerbations, Nature Medicine, volume 27, no. 4, pages 688-699, DOI:10.1038/s41591-021-01289-7. [PDF]
• Winter MJ, Pinion J, Tochwin A, Takesono A, Ball JS, Grabowski P, Metz J, Trznadel M, Tse K, Redfern WS. (2021) Functional brain imaging in larval zebrafish for characterising the effects of seizurogenic compounds acting via a range of pharmacological mechanisms, Br J Pharmacol, volume 178, no. 13, pages 2671-2689, DOI:10.1111/bph.15458. [PDF]
• Wedgwood K, Slowinski P, Manson J, Tsaneva-Atanasova K, Krauskopf B. (2021) Robust spike timing in an excitable cell with delayed feedback, Journal of the Royal Society Interface, volume 18, DOI:10.1098/rsif.2021.0029. [PDF]
• McArdle CA, Voliotis M, Tsaneva-Atanasova K, Fowkes RC. (2021) Chapter 7 - Gonadotropin-Releasing Hormone Receptors and Signaling, Cellular Endocrinology in Health and Disease (Second Edition), Academic Press, 149-181, DOI:10.1016/B978-0-12-819801-8.00007-7. [PDF]
• Challen R, Brooks-Pollock E, Read JM, Dyson L, Tsaneva-Atanasova K, Danon L. (2021) Risk of mortality in patients infected with SARS-CoV-2 variant of concern 202012/1: matched cohort study, BMJ, volume 372, pages n579-n579, DOI:10.1136/bmj.n579. [PDF]
• Arthur T, Harris D, Allen K, Naylor C, Wood G, Vine S, Wilson M, Tsaneva-Atanasova K, Buckingham G. (2021) Visuo-motor attention during object interaction in children with developmental coordination disorder, Cortex, DOI:10.1016/j.cortex.2021.02.013. [PDF]
• Spencer APC, Brooks JCW, Masuda N, Byrne H, Lee-Kelland R, Jary S, Thoresen M, Tonks J, Goodfellow M, Cowan FM. (2021) Disrupted brain connectivity in children treated with therapeutic hypothermia for neonatal encephalopathy, NeuroImage: Clinical, volume 30, DOI:10.1016/j.nicl.2021.102582.
• Cortese D, Wan KY. (2021) Control of Helical Navigation by Three-Dimensional Flagellar Beating, Physical Review Letters, volume 126, no. 8, article no. 088003, DOI:10.1103/physrevlett.126.088003.
• Pandey R, Al-Nuaimi Y, Mishra RK, Spurgeon SK, Goodfellow M. (2021) Role of subnetworks mediated by TNF α , IL-23/IL-17 and IL-15 in a network involved in the pathogenesis of psoriasis, Scientific Reports, volume 11, no. 1, DOI:10.1038/s41598-020-80507-7.
• Conte D, Borisyuk R, Hull M, Roberts A. (2021) A simple method defines 3D morphology and axon projections of filled neurons in a small CNS volume: Steps toward understanding functional network circuitry, J Neurosci Methods, volume 351, DOI:10.1016/j.jneumeth.2020.109062. [PDF]
• Liu H, Prashant NM, Spurr LF, Bousounis P, Alomran N, Ibeawuchi H, Sein J, Słowiński P, Tsaneva-Atanasova K, Horvath A. (2021) scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets, BMC Genomics, volume 22, no. 1, pages 40-40, DOI:10.1186/s12864-020-07334-y. [PDF]
• Smith LIF, Zhao Z, Walker J, Lightman S, Spiga F. (2021) Activation and expression of endogenous CREB-regulated transcription coactivators (CRTC) 1, 2 and 3 in the rat adrenal gland, Journal of Neuroendocrinology, volume 33, no. 1, DOI:10.1111/jne.12920.
• Guo H, Man Y, Wan KY, Kanso E. (2021) Intracellular coupling modulates biflagellar synchrony, Journal of The Royal Society Interface, volume 18, no. 174, pages 20200660-20200660, DOI:10.1098/rsif.2020.0660.
• Wan KY, Jékely G. (2021) Origins of eukaryotic excitability, Philosophical Transactions of the Royal Society B: Biological Sciences, volume 376, no. 1820, pages 20190758-20190758, DOI:10.1098/rstb.2019.0758.
• Coste A, Bardy BG, Janaqi S, Słowiński P, Tsaneva-Atanasova K, Goupil JL, Marin L. (2021) Correction to: Decoding identity from motion: how motor similarities colour our perception of self and others, Psychol Res, volume 85, no. 2, DOI:10.1007/s00426-020-01361-w. [PDF]

2020

• Guel-Cortez AJ, Kim EJ. (2020) Information length analysis of linear autonomous stochastic processes, Entropy, volume 22, no. 11, pages 1-18, DOI:10.3390/e22111265.
• Wan KY, Jékely G. (2020) Origins of eukaryotic excitability, DOI:10.48550/arxiv.2007.13388.
• Spencer APC, Brooks JCW, Masuda N, Byrne H, Lee-Kelland R, Jary S, Thoresen M, Tonks J, Goodfellow M, Cowan FM. (2020) Structural Connectivity in Children Treated with Therapeutic Hypothermia for Neonatal Encephalopathy, DOI:10.1101/2020.09.23.20200014.
• Mohammadi H, Challenor P, Williamson D, Goodfellow M. (2020) Cross-validation based adaptive sampling for Gaussian process models, ASA Journal on Uncertainty Quantification, volume 10, pages 294-316. [PDF]
• Abbara A, Eng PC, Phylactou M, Clarke SA, Richardson R, Sykes CM, Phumsatitpong C, Mills E, Modi M, Izzi-Engbeaya C. (2020) Kisspeptin receptor agonist has therapeutic potential for female reproductive disorders, J Clin Invest, volume 130, no. 12, DOI:10.1172/JCI139681. [PDF]
• Zavala E, Voliotis M, Zerenner T, Tabak J, Walker JJ, Li XF, Terry JR, Lightman SL, O’Byrne K, Tsaneva-Atanasova K. (2020) Dynamic Hormone Control of Stress and Fertility, Frontiers in Physiology, volume 11, pages 1457-1457, DOI:10.3389/fphys.2020.598845. [PDF]
• Li S, Wan KY, Chen W, Tao H, Liang X, Pan J. (2020) Functional exploration of heterotrimeric kinesin-II in IFT and ciliary length control in Chlamydomonas, Elife, volume 9, DOI:10.7554/eLife.58868. [PDF]
• Tait L, Tamagnini F, Stothart G, Barvas E, Monaldini C, Frusciante R, Volpini M, Guttmann S, Coulthard E, Brown JT. (2020) EEG microstate complexity for aiding early diagnosis of Alzheimer’s disease, Scientific Reports, volume 10, no. 1, article no. 17627, DOI:10.1038/s41598-020-74790-7.
• Parakkal Unni M, Menon PP, Livi L, Wilson MR, Young WR, Bronte-Stewart HM, Tsaneva-Atanasova K. (2020) Data-Driven Prediction of Freezing of Gait Events From Stepping Data, Frontiers in Medical Technology, volume 2, pages 581264-581264, DOI:10.3389/fmedt.2020.581264. [PDF]
• Parakkal Unni M, Menon PP, Wilson MR, Tsaneva-Atanasova K. (2020) Ankle Push-off Based Mathematical Model for Freezing of Gait in Parkinson’s Disease, Frontiers in Bioengineering and Biotechnology, volume 8, pages 1197-1197, DOI:10.3389/fbioe.2020.552635.
• Creaser J, Ashwin P, Tsaneva-Atanasova K. (2020) Sequential Escapes and Synchrony Breaking for Networks of Bistable Oscillatory Nodes, SIAM Journal on Applied Dynamical Systems, volume 19, pages 2829-2846, article no. 4, DOI:10.1137/20M1345773. [PDF]
• Avitabile D, Davis JL, Wedgwood KCA. (2020) Bump attractors and waves in networks of leaky integrate-and-fire neurons. [PDF]
• Creaser J, Lin C, Ridler T, Brown JT, D’Souza W, Seneviratne U, Cook M, Terry JR, Tsaneva-Atanasova K. (2020) Domino-like transient dynamics at seizure onset in epilepsy, PLOS Computational Biology, volume 16, no. 9, pages e1008206-e1008206, DOI:10.1371/journal.pcbi.1008206. [PDF]
• Słowiński P, Li M, Restrepo P, Alomran N, Spurr LF, Miller C, Tsaneva-Atanasova K, Horvath A. (2020) GeTallele: A Method for Analysis of DNA and RNA Allele Frequency Distributions, Frontiers in Bioengineering and Biotechnology, volume 8, pages 1021-1021, DOI:10.3389/fbioe.2020.01021. [PDF]
• Pope RJP, Garner KL, Voliotis M, Lay AC, Betin VMS, Tsaneva-Atanasova K, Welsh GI, Coward RJM, McArdle CA. (2020) An information theoretic approach to insulin sensing by human kidney podocytes, Molecular and Cellular Endocrinology, pages 110976-110976, DOI:10.1016/j.mce.2020.110976. [PDF]
• Voliotis M, Rosko J, Pilizota T, Liverpool T. (2020) Steady state running rate sets the speed and accuracy of accumulation of swimming bacterial populations. [PDF]
• Robinson TL, Diaz K, Ozkan-Aydin Y, Wan KY, Goldman DI. (2020) Gait dynamics of a quadriflagellate robophysical model, INTEGRATIVE AND COMPARATIVE BIOLOGY, volume 60, pages E198-E198. [PDF]
• Wan KY. (2020) Gait Rhythmogenesis and Spatiotemporal Ordering in Self-propelling Unicellular Microorganisms, INTEGRATIVE AND COMPARATIVE BIOLOGY, volume 60, pages E246-E246. [PDF]
• Darki F, Rankin J. (2020) Methods to assess binocular rivalry with periodic stimuli, Journal of Mathematical Neuroscience, volume 10, no. 1, DOI:10.1186/s13408-020-00087-8.
• Rosenbauer J, Zhang C, Mattes B, Reinartz I, Wedgwood K, Schindler S, Sinner C, Scholpp S, Schug A. (2020) Modeling of Wnt-mediated tissue patterning in vertebrate embryogenesis, PLOS Computational Biology, volume 16, no. 6, pages e1007417-e1007417, DOI:10.1371/journal.pcbi.1007417.
• Voliotis M. (2020) Single-cell microfluidics facilitates the rapid quantification of antibiotic accumulation in Gram-negative bacteria. (Model & Matlab Code).
• Cama J, Voliotis M, Metz J, Smith A, Iannucci J, Keyser UF, Tsaneva K, Pagliara S. (2020) Single-cell microfluidics facilitates the rapid quantification of antibiotic accumulation in Gram-negative bacteria, Lab on a Chip, DOI:10.1039/D0LC00242A.
• Richards DM. (2020) Receptor Models of Phagocytosis: The Effect of Target Shape, Adv Exp Med Biol, volume 1246, pages 55-70, DOI:10.1007/978-3-030-40406-2_4. [PDF]
• Campos P, Walker JJ, Mollard P. (2020) Diving into the brain: deep-brain imaging techniques in conscious animals, J Endocrinol, volume 246, no. 2, pages R33-R50, DOI:10.1530/JOE-20-0028. [PDF]
• Mac Aogáin M, Lau KJX, Cai Z, Narayana JK, Purbojati RW, Drautz-Moses DI, Gaultier NE, Jaggi TK, Tiew PY, Ong TH. (2020) Metagenomics Reveals a Core Macrolide Resistome Related to Microbiota in Chronic Respiratory Disease, American Journal of Respiratory and Critical Care Medicine, pages rccm.201911-2202OC, DOI:10.1164/rccm.201911-2202OC. [PDF]
• Zaveri HP, Schelter B, Schevon CA, Jiruska P, Jefferys JGR, Worrell G, Schulze-Bonhage A, Joshi RB, Jirsa V, Goodfellow M. (2020) Controversies on the network theory of epilepsy: Debates held during the ICTALS 2019 conference, Seizure, volume 78, pages 78-85, DOI:10.1016/j.seizure.2020.03.010. [PDF]
• Richards DM, Walker JJ, Tabak J. (2020) Ion channel noise shapes the electrical activity of endocrine cells, PLoS Comput Biol, volume 16, no. 4, DOI:10.1371/journal.pcbi.1007769. [PDF]
• Passmore JB, Carmichael RE, Schrader TA, Godinho LF, Ferdinandusse S, Lismont C, Wang Y, Hacker C, Islinger M, Fransen M. (2020) Mitochondrial fission factor (MFF) is a critical regulator of peroxisome maturation, Biochim Biophys Acta Mol Cell Res, volume 1867, no. 7, DOI:10.1016/j.bbamcr.2020.118709. [PDF]
• Varga MN, Merrison-Hort R, Watson P, Borisyuk R, Livingstone D. (2020) Tadpole VR: virtual reality visualization of a simulated tadpole spinal cord, Virtual Reality, volume 25, no. 1, pages 1-17, DOI:10.1007/s10055-020-00431-z.
• Yousif N, Bain PG, Nandi D, Borisyuk R. (2020) A Population Model of Deep Brain Stimulation in Movement Disorders From Circuits to Cells, Frontiers in Human Neuroscience, volume 14, DOI:10.3389/fnhum.2020.00055.
• Tiew PY, Ko FWS, Narayana JK, Poh ME, Xu H, Neo HY, Loh L-C, Ong C-K, Aogáin MM, Tan JHY. (2020) ‘HIGH RISK’ CLINICAL AND INFLAMMATORY CLUSTERS IN COPD OF CHINESE DESCENT, Chest, DOI:10.1016/j.chest.2020.01.043. [PDF]
• Lopes MA, Junges L, Woldman W, Goodfellow M, Terry JR. (2020) The Role of Excitability and Network Structure in the Emergence of Focal and Generalized Seizures, Frontiers in Neurology, volume 11, pages 74-74, DOI:10.3389/fneur.2020.00074. [PDF]
• Coste A, Bardy BG, Janaqi S, Słowiński P, Tsaneva-Atanasova K, Goupil JL, Marin L. (2020) Decoding identity from motion: how motor similarities colour our perception of self and others, Psychological Research, volume 85, pages 509-519, DOI:10.1007/s00426-020-01290-8. [PDF]
• Challen R, Tsaneva-Atanasova K, Edwards T, Gompels L, Dayer M, Pitt M, Danon L. (2020) Factors influencing digital review of pathology test results in an inpatient setting: a cross-sectional study, JAMIA Open, DOI:10.1093/jamiaopen/ooaa003. [PDF]
• S\lowiński P, Al-Ramadhani S, Tsaneva-Atanasova K. (2020) Neurologically Motivated Coupling Functions in Models of Motor Coordination, SIAM Journal on Applied Dynamical Systems, volume 19, pages 208-232, article no. 1, DOI:10.1137/19M1279381. [PDF]
• Spurr LF, Alomran N, Bousounis P, Reece-Stremtan D, Prashant NM, Liu H, Słowiński P, Li M, Zhang Q, Sein J. (2020) ReQTL: identifying correlations between expressed SNVs and gene expression using RNA-sequencing data, Bioinformatics, volume 36, no. 5, pages 1351-1359, DOI:10.1093/bioinformatics/btz750. [PDF]
• Baldemir H, Avitabile D, Tsaneva-Atanasova K. (2020) Pseudo-plateau bursting and mixed-mode oscillations in a model of developing inner hair cells, Communications in Nonlinear Science and Numerical Simulation, volume 80, pages 104979-104979, DOI:10.1016/j.cnsns.2019.104979. [PDF]

2019

• Guel-Cortez AJ, Méndez-Barrios CF, González-Galván EJ, Mejía-Rodríguez G, Félix L. (2019) Geometrical design of fractional PD^μ controllers for linear time-invariant fractional-order systems with time delay, Proceedings of the Institution of Mechanical Engineers. Part I: Journal of Systems and Control Engineering, volume 233, no. 7, pages 815-829, DOI:10.1177/0959651818823450.
• Guel-Cortez AJ, Sen M, Goodwine B. (2019) Closed form time response of an infinite tree of mechanical components described by an irrational transfer function, Proceedings of the American Control Conference, volume 2019-July, pages 5828-5833, DOI:10.23919/acc.2019.8815243.
• Guel-Cortez AJ, Sen M, Mendez-Barrios CF, Goodwine B. (2019) Fractional-PD^μ controllers for irrational systems, 2019 6th International Conference on Control, Decision and Information Technologies, CoDIT 2019, pages 13-18, DOI:10.1109/CoDIT.2019.8820577.
• Pérez-Cervera A, Ashwin P, Huguet G, Seara TM, Rankin J. (2019) The uncoupling limit of identical Hopf bifurcations with an application to perceptual bistability, DOI:10.48550/arxiv.1901.07283.
• Dhillo W, Prague J, Voliotis M, Clarke S, Comninos A, Abbara A, Jayasena C, Roberts R, Yang L, Veldhuis J. (2019) OR11-4 Determining the Relationship between Hot Flushes and LH Pulses in Menopausal Women Using Mathematical Modelling, Journal of the Endocrine Society, volume 3, no. Suppl 1, pages or11-or14, DOI:10.1210/js.2019-or11-4.
• Corbett A, Slowinski P, Ballard C, Aarsland D, Wesnes K, Brooker H. (2019) P4‐428: COGNITIVE TRAJECTORIES OF HEALTHY OLDER ADULTS OVER THREE YEARS: A LARGE‐SCALE LONGITUDINAL ANALYSIS, Alzheimer's & Dementia, volume 15, pages p1466-p1467, DOI:10.1016/j.jalz.2019.06.4100.
• Bick C, Goodfellow M, Laing CR, Martens EA. (2019) Understanding the dynamics of biological and neural oscillator networks through exact mean-field reductions: a review, DOI:10.48550/arxiv.1902.05307.
• Laiou P, Avramidis E, Lopes MA, Abela E, Müller M, Akman OE, Richardson MP, Rummel C, Schindler K, Goodfellow M. (2019) Quantification and selection of ictogenic zones in epilepsy surgery, DOI:10.1101/602490.
• Dhillo W, Liang S, Kinghorn A, Voliotis M, Prague J, Veldhuis J, Tsaneva-Atanasova K, McArdle C, Li HWR, Cass T. (2019) SAT-LB040 Measuring LH Pulsatility in Patients with Reproductive Disorders Using a Novel Robotic Aptamer-Enabled Electrochemical Reader (RAPTER), Journal of the Endocrine Society, volume 3, no. Supplement_1, DOI:10.1210/js.2019-sat-lb040.
• Tait L, Tamagnini F, Stothart G, Barvas E, Monaldini C, Frusciante R, Volpini M, Guttmann S, Coulthard E, Brown JT. (2019) EEG microstate complexity for aiding early diagnosis of Alzheimer’s disease, bioRxiv, pages 833244-833244, DOI:10.1101/833244. [PDF]
• Wan KY, Jékely G. (2019) On the unity and diversity of cilia, Philosophical Transactions of the Royal Society B: Biological Sciences, volume 375, no. 1792, pages 20190148-20190148, DOI:10.1098/rstb.2019.0148.
• Mac Aogain M, Kumar JN, Lim AYH, Low TB, Ong TH, Chew FT, Oliver B, Keir HR, Koh MS, Abisheganaden JA. (2019) "Integrative Microbiomics" Through Similarity Network Fusion Identifies Clinically Relevant Bronchiectasis Phenotypes, AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, volume 199. [PDF]
• Wan KY, Hürlimann SK, Fenix AM, McGillivary RM, Makushok T, Burns E, Sheung JY, Marshall WF. (2019) Reorganization of complex ciliary flows around regeneratingStentor coeruleus, Philosophical Transactions of the Royal Society B: Biological Sciences, volume 375, no. 1792, pages 20190167-20190167, DOI:10.1098/rstb.2019.0167.
• Wan KY. (2019) Synchrony and symmetry-breaking in active flagellar coordination, Philosophical Transactions of the Royal Society B: Biological Sciences, volume 375, no. 1792, pages 20190393-20190393, DOI:10.1098/rstb.2019.0393.
• Wan KY. (2019) Ciliate Biology: The Graceful Hunt of a Shape-Shifting Predator, Current Biology, volume 29, no. 22, pages R1174-R1176, DOI:10.1016/j.cub.2019.10.013.
• Rankin J, Rinzel J. (2019) Computational Models of Auditory Stream Segregation, Encyclopedia of Computational Neuroscience, Springer New York, 1-6, DOI:10.1007/978-1-4614-7320-6_100685-1.
• Laiou P, Avramidis E, Lopes MA, Abela E, Müller M, Akman OE, Richardson MP, Rummel C, Schindler K, Goodfellow M. (2019) Quantification and Selection of Ictogenic Zones in Epilepsy Surgery, Frontiers in Neurology, volume 10, DOI:10.3389/fneur.2019.01045.
• Smith P, Buhl E, Tsaneva-Atanasova K, Hodge JJL. (2019) Shaw and Shal voltage-gated potassium channels mediate circadian changes in Drosophila clock neuron excitability, The Journal of Physiology, DOI:10.1113/JP278826. [PDF]
• Voliotis M, Feng Li X, De Burgh R, Lass G, Lightman SL, O’Byrne KT, Tsaneva-Atanasova K. (2019) The origin of GnRH pulse generation: An integrative mathematical-experimental approach, Journal of Neuroscience, DOI:10.1523/JNEUROSCI.0828-19.2019. [PDF]
• Galvis D, Walsh D, Harries LW, Latorre E, Rankin J. (2019) A dynamical systems model for the measurement of cellular senescence, Journal of the Royal Society Interface, volume 16, article no. 159, DOI:10.1098/rsif.2019.0311.
• Byrne Á, Rinzel J, Rankin J. (2019) Auditory streaming and bistability paradigm extended to a dynamic environment, Hearing Research, volume 383, DOI:10.1016/j.heares.2019.107807.
• Buckingham G, Allen K, Vine SJ, Harris DJ, Wood G, Tsaneva-Atanasova K, Wilson MR. (2019) Investigating How Prior Knowledge Influences Perception and Action in Developmental Coordination Disorder, PERCEPTION, volume 48, pages 75-76. [PDF]
• Tait L. (2019) Multi-Scale Mathematical Modelling of Brain Networks in Alzheimer's Disease.
• Roberts A, Borisyuk R, Buhl E, Ferrario A, Koutsikou S, Li W-C, Soffe SR. (2019) The decision to move: response times, neuronal circuits and sensory memory in a simple vertebrate, Proc Biol Sci, volume 286, no. 1899, DOI:10.1098/rspb.2019.0297. [PDF]
• Dhillo W, Liang S, Kinghorn A, Voliotis M, Prague J, Veldhuis J, Tsaneva-Atanasova K, McArdle C, Li R, Cass A. (2019) Measuring LH Pulsatility in Patients with Reproductive Disorders Using a Novel Robotic Aptamer-Enabled Electrochemical Reader (RAPTER), HUMAN REPRODUCTION, volume 34, pages 125-126. [PDF]
• Le Page G, Gunnarsson L, Trznadel M, Wedgwood KCA, Baudrot V, Snape J, Tyler CR. (2019) Variability in cyanobacteria sensitivity to antibiotics and implications for environmental risk assessment, Science of the Total Environment, volume 695, DOI:10.1016/j.scitotenv.2019.133804.
• Rankin J, Rinzel J. (2019) Computational models of auditory perception from feature extraction to stream segregation and behavior, Curr Opin Neurobiol, volume 58, pages 46-53, DOI:10.1016/j.conb.2019.06.009. [PDF]
• Lopes MA, Perani S, Yaakub SN, Richardson MP, Goodfellow M, Terry JR. (2019) Revealing epilepsy type using a computational analysis of interictal EEG, Sci Rep, volume 9, no. 1, DOI:10.1038/s41598-019-46633-7. [PDF]
• Tait L, Stothart G, Coulthard E, Brown JT, Kazanina N, Goodfellow M. (2019) Network substrates of cognitive impairment in Alzheimer's Disease, Clin Neurophysiol, volume 130, no. 9, pages 1581-1595, DOI:10.1016/j.clinph.2019.05.027. [PDF]
• Tilston TW, Brown RD, Wateridge MJ, Arms-Williams B, Walker JJ, Sun Y, Wells T. (2019) A Novel Automated System Yields Reproducible Temporal Feeding Patterns in Laboratory Rodents, J Nutr, volume 149, no. 9, pages 1674-1684, DOI:10.1093/jn/nxz116. [PDF]
• Słowiński P, Sheybani L, Michel CM, Richardson MP, Quairiaux C, Terry JR, Goodfellow M. (2019) Background EEG connectivity captures the time-course of epileptogenesis in a mouse model of epilepsy, eneuro, pages ENEURO.0059-ENEU19.2019, DOI:10.1523/ENEURO.0059-19.2019. [PDF]
• Junges L, Lopes MA, Terry JR, Goodfellow M. (2019) The role that choice of model plays in predictions for epilepsy surgery, Sci Rep, volume 9, no. 1, DOI:10.1038/s41598-019-43871-7. [PDF]
• Lopes MA, Goodfellow M, Terry JR. (2019) A Model-Based Assessment of the Seizure Onset Zone Predictive Power to Inform the Epileptogenic Zone, Frontiers in Computational Neuroscience, volume 13, DOI:10.3389/fncom.2019.00025. [PDF]
• Prague JK, Voliotis M, Clarke S, Comninos AN, Abbara A, Jayasena CN, Roberts RE, Yang L, Veldhuis JD, Tsaneva-Atanasova K. (2019) Determining the relationship between hot flushes and LH pulses in menopausal women using mathematical modelling, The Journal of Clinical Endocrinology & Metabolism, DOI:10.1210/jc.2018-02797.
• Mohammadi H, Challenor P, Goodfellow M, Williamson D. (2019) Emulating computer models with step-discontinuous outputs using Gaussian processes. [PDF]
• Pinion J. (2019) Concordant spatio-temporal patterns of brain activation in zebrafish exposed to compounds with similar pharmacodynamics or with similar seizurogenic potential.
• Bick C, Goodfellow M, Laing CR, Martens EA. (2019) Understanding the dynamics of biological and neural oscillator networks through exact mean-field reductions: a review, Journal of Mathematical Neuroscience, 10(1):9, 2020. [PDF]
• Ferrat L. (2019) Machine Learning and Statistical Analysis of Complex Mathematical Models: An Application to Epilepsy.
• Curran JA, Buhl E, Tsaneva-Atanasova K, Hodge JJL. (2019) Age-dependent changes in clock neuron structural plasticity and excitability are associated with a decrease in circadian output behaviour and sleep, Neurobiology of Aging, DOI:10.1016/j.neurobiolaging.2019.01.025. [PDF]
• Liang S, Kinghorn AB, Voliotis M, Prague JK, Veldhuis JD, Tsaneva-Atanasova K, McArdle CA, Li RHW, Cass AEG, Dhillo WS. (2019) Measuring luteinising hormone pulsatility with a robotic aptamer-enabled electrochemical reader, Nature Communications, volume 10, no. 1, DOI:10.1038/s41467-019-08799-6. [PDF]
• Zavala E, Wedgwood KCA, Voliotis M, Tabak J, Spiga F, Lightman SL, Tsaneva-Atanasova K. (2019) Mathematical Modelling of Endocrine Systems, volume 30, pages 244-257, article no. 4, DOI:10.1016/j.tem.2019.01.008.
• Williams CA, Wedgwood KCA, Mohammadi H, Prouse K, Tomlinson OW, Tsaneva-Atanasova K. (2019) Cardiopulmonary responses to maximal aerobic exercise in patients with cystic fibrosis, PLoS ONE, volume 14, article no. 2, DOI:10.1371/journal.pone.0211219.
• Słowiński P, Baldemir H, Wood G, Alizadehkhaiyat O, Coyles G, Vine S, Williams G, Tsaneva-Atanasova K, Wilson M. (2019) Gaze training supports self-organization of movement coordination in children with developmental coordination disorder, Scientific Reports, volume 9, no. 1, pages 1712-1712, DOI:10.1038/s41598-018-38204-z. [PDF]
• Pérez-Cervera A, Ashwin P, Huguet G, Seara TM, Rankin J. (2019) The uncoupling limit of identical Hopf bifurcations with an application to perceptual bistability. [PDF]
• Williams CAP, Wedgwood K, Mohammadi H, Prouse K, Tomlinson O, Tsaneva K. (2019) Cardiopulmonary Responses to Maximal Aerobic Exercise in Patients with Cystic Fibrosis (data set), DOI:10.24378/exe.1105.
• Challen R, Denny J, Pitt M, Gompels L, Edwards T, Tsaneva-Atanasova K. (2019) Artificial intelligence, bias and clinical safety, BMJ Quality & Safety, DOI:10.1136/bmjqs-2018-008370. [PDF]
• Mohammadi H, Challenor P, Goodfellow M. (2019) Emulating dynamic non-linear simulators using Gaussian processes, Computational Statistics and Data Analysis, volume 139, pages 178-196, DOI:10.1016/j.csda.2019.05.006.

2018

• Guel-Cortez AJ, Mendez-Barrios CF, Ramirez V, Romero JG, Gonzalez-Galvan E, Kado-Mercado J. (2018) Fractional-PD controllers design for LTI-systems with time-delay. A geometric approach, 2018 5th International Conference on Control, Decision and Information Technologies, CoDIT 2018, pages 446-451, DOI:10.1109/CoDIT.2018.8394881.
• Slowinski P, Baxter P, Tsaneva K. (2018) A feasibility study using movement and perspective-taking as a diagnostic aid for psychosis. [PDF]
• Alobaid H, Voliotis M, Tsaneva-Atanasova K, McArdle C. (2018) Measuring of information transfer via gonadotropin-releasing hormone receptors (GnRHR) shows a remarkable loss of information through signalling, Endocrine Abstracts, DOI:10.1530/endoabs.59.p130.
• Burylko O, Kazanovich Y, Borisyuk R. (2018) Winner-take-all in a phase oscillator system with adaptation, Sci Rep, volume 8, no. 1, DOI:10.1038/s41598-017-18666-3. [PDF]
• Ferrario A, Merrison-Hort R, Soffe SR, Borisyuk R. (2018) Structural and functional properties of a probabilistic model of neuronal connectivity in a simple locomotor network, Elife, volume 7, DOI:10.7554/eLife.33281. [PDF]
• Ferrario A, Merrison-Hort R, Soffe SR, Li W-C, Borisyuk R. (2018) Bifurcations of Limit Cycles in a Reduced Model of the Xenopus Tadpole Central Pattern Generator, J Math Neurosci, volume 8, no. 1, DOI:10.1186/s13408-018-0065-9. [PDF]
• Wedgwood KCA. (2018) EPSRC blog.
• Laiou P, Avramidis E, Lopes MA, Akman OE, Goodfellow M. (2018) Estimating Seizure Freedom Post-Surgery Using Mathematical Modelling, EPILEPSIA, volume 59, pages S204-S204. [PDF]
• Lopes M, Richardson M, Abela E, Rummel C, Schindler K, Goodfellow M, Terry J. (2018) A Computer Model Biomarker of Focal and Generalized Epilepsies from Resting State EEG, EPILEPSIA, volume 59, pages S58-S58. [PDF]
• Wan KY. (2018) Coordination of eukaryotic cilia and flagella, Essays in Biochemistry, volume 62, no. 6, pages 829-838, DOI:10.1042/EBC20180029.
• Voliotis M, Garner KL, Alobaid H, Tsaneva-Atanasova K, McArdle CA. (2018) Exploring Dynamics and Noise in Gonadotropin-Releasing Hormone (GnRH) Signaling, United States, 405-429, DOI:10.1007/978-1-4939-8618-7_19. [PDF]
• Wedgwood KCA, Tabak J, Tsaneva-Atanasova K. (2018) Modelling Ion Channels, Mathematical Modelling in Plant Biology, Springer International Publishing, 37-52, DOI:10.1007/978-3-319-99070-5_3.
• Tamagnini F, Cotton M, Goodall O, Harrison G, Jeynes C, Palombo F, Tomkow J, Tomkow T, Wedgwood K, Welsman J. (2018) ’Of Mice and Dementia’: A filmed conversation on the use of animals in dementia research, Dementia (London, England), volume 17, pages 1055-1063, article no. 8, DOI:10.1177/1471301218789560. [PDF]
• Wan KY, Goldstein RE. (2018) Time Irreversibility and Criticality in the Motility of a Flagellate Microorganism, Physical Review Letters, volume 121, no. 5, DOI:10.1103/PhysRevLett.121.058103.
• Koutsikou S, Merrison-Hort R, Buhl E, Ferrario A, Li W-C, Borisyuk R, Soffe SR, Roberts A. (2018) A simple decision to move in response to touch reveals basic sensory memory and mechanisms for variable response times, J Physiol, volume 596, no. 24, pages 6219-6233, DOI:10.1113/JP276356. [PDF]
• Slowinski P, Al-Ramadhani S, Tsaneva-Atanasova KT. (2018) Relaxation oscillations and canards in the Jirsa–Kelso excitator model: global flow perspective, The European Physical Journal Special Topics, volume 227(5), pages 591-601, DOI:10.1140/epjst/e2018-00129-2. [PDF]
• Tsaneva-Atanasova K, Diaz-Zuccarini V. (2018) Editorial: Mathematics for Healthcare as Part of Computational Medicine, Frontiers in Physiology, volume 9, pages 985-985, DOI:10.3389/fphys.2018.00985. [PDF]
• Smith P, Arias R, Sonti S, Odgerel Z, Santa-Maria I, McCabe BD, Tsaneva-Atanasova K, Louis ED, Hodge JJL, Clark LN. (2018) A Drosophila Model of Essential Tremor, Scientific Reports, volume 8, no. 1, article no. 7664, DOI:10.1038/s41598-018-25949-w.
• Müller M, Schindler K, Goodfellow M, Pollo C, Rummel C, Steimer A. (2018) Evaluating resective surgery targets in epilepsy patients: A comparison of quantitative EEG methods, Journal of Neuroscience Methods, volume 305, pages 54-66, DOI:10.1016/j.jneumeth.2018.04.021.
• Tait L, Wedgwood K, Tsaneva-Atanasova K, Brown JT, Goodfellow M. (2018) Control of clustered action potential firing in a mathematical model of entorhinal cortex stellate cells, J Theor Biol, volume 449, pages 23-34, DOI:10.1016/j.jtbi.2018.04.013. [PDF]
• Ashwin P, Creaser J, Tsaneva-Atanasova K. (2018) Sequential escapes: onset of slow domino regime via a saddle connection, The European Physical Journal Special Topics, volume 227, pages 1091-1100, article no. 10, DOI:10.1140/epjst/e2018-800038-5. [PDF]
• Ferrat LA, Goodfellow M, Terry JR. (2018) Classifying dynamic transitions in high dimensional neural mass models: A random forest approach, PLoS Computational Biology, volume 14, no. 3, DOI:10.1371/journal.pcbi.1006009.
• Lopes MA, Richardson MP, Abela E, Rummel C, Schindler K, Goodfellow M, Terry JR. (2018) Elevated Ictal Brain Network Ictogenicity Enables Prediction of Optimal Seizure Control, Frontiers in Neurology, volume 9, DOI:10.3389/fneur.2018.00098. [PDF]
• Castro IG, Richards DM, Metz J, Costello JL, Passmore JB, Schrader TA, Gouveia A, Ribeiro D, Schrader M. (2018) A role for Mitochondrial Rho GTPase 1 (MIRO1) in motility and membrane dynamics of peroxisomes, Traffic, volume 19, no. 3, pages 229-242, article no. n/a, DOI:10.1111/tra.12549. [PDF]
• Stirrat LI, Walker JJ, Stryjakowska K, Jones N, Homer NZM, Andrew R, Norman JE, Lightman SL, Reynolds RM. (2018) Pulsatility of glucocorticoid hormones in pregnancy: Changes with gestation and obesity, Clin Endocrinol (Oxf), volume 88, no. 4, pages 592-600, DOI:10.1111/cen.13548. [PDF]
• Słowiński P. (2018) Percolation Operators and Related Models, Probabilistic Cellular Automata: Theory, Applications and Future Perspectives, Springer International Publishing, 197-214, DOI:10.1007/978-3-319-65558-1_14. [PDF]
• Creaser J, Tsaneva-Atanasova K, Ashwin P. (2018) Sequential noise-induced escapes for oscillatory network dynamics, SIAM Journal on Applied Dynamical Systems, volume 17(1), pages 500-525, DOI:10.1137/17M1126412.
• Kusev P, Schaik P, Tsaneva-Atanasova K, Juliusson A, Chater N. (2018) Adaptive Anchoring Model: How Static and Dynamic Presentations of Time Series Influence Judgments and Predictions, Cognitive science, volume 42, pages 77-102, article no. 1.

2017

• Merrison-Hort R, Yousif N, Ferrario A, Borisyuk R. (2017) Oscillatory Neural Models of the Basal Ganglia for Action Selection in Healthy and Parkinsonian Cases, Computational Neurology and Psychiatry, 149-189, DOI:10.1007/978-3-319-49959-8_7.
• Kazanovich Y, Borisyuk R. (2017) Reaction times in visual search can be explained by a simple model of neural synchronization, Neural Netw, volume 87, pages 1-7, DOI:10.1016/j.neunet.2016.12.003. [PDF]
• Yousif N, Mace M, Pavese N, Borisyuk R, Nandi D, Bain P. (2017) A Network Model of Local Field Potential Activity in Essential Tremor and the Impact of Deep Brain Stimulation, PLoS Comput Biol, volume 13, no. 1, DOI:10.1371/journal.pcbi.1005326. [PDF]
• Masud MS, Borisyuk R, Stuart L. (2017) Advanced correlation grid: Analysis and visualisation of functional connectivity among multiple spike trains, J Neurosci Methods, volume 286, pages 78-101, DOI:10.1016/j.jneumeth.2017.05.016. [PDF]
• Borisyuk R, Merrison-Hort R, Soffe SR, Koutsikou S, Li W-C. (2017) To swim or not to swim: A population-level model of Xenopus tadpole decision making and locomotor behaviour, Biosystems, volume 161, pages 3-14, DOI:10.1016/j.biosystems.2017.07.004. [PDF]
• Davis O, Merrison-Hort R, Soffe SR, Borisyuk R. (2017) Studying the role of axon fasciculation during development in a computational model of the Xenopus tadpole spinal cord, Sci Rep, volume 7, no. 1, DOI:10.1038/s41598-017-13804-3. [PDF]
• Wan KY, Goldstein RE. (2017) Spontaneous and induced gait-switching in microswimmers, EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, volume 46, pages S280-S280. [PDF]
• Wan KY, Goldstein RE. (2017) Spontaneous and induced gait-switching in microswimmers, EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, volume 46, pages S94-S94. [PDF]
• Williams CA, Wedgwood KCA, Mohammadi H, Tomlinson OW, Tsaneva-Atanasova K. (2017) Modelling of the Cardiopulmonary Responses to Maximal Aerobic Exercise in Patients with Cystic Fibrosis, Cold Spring Harbor Laboratory, DOI:10.1101/155713.
• Aptekarev AI, Afendikov AL, Ataullakhanov FI, Balabaev NK, Biktashev VN, Biktasheva IV, Borisyuk RM, Vvedenskaya ND, Dagkesamanskii RD, Zarkhin YG. (2017) To the memory of Emmanuil El'evich Shnol, RUSSIAN MATHEMATICAL SURVEYS, volume 72, no. 1, pages 185-198, DOI:10.1070/RM9751. [PDF]
• Richards DM, Endres RG. (2017) How cells engulf: a review of theoretical approaches to phagocytosis, Reports on Progress in Physics, volume 80, no. 12, pages 126601-126601, DOI:10.1088/1361-6633/aa8730.
• Rankin J, Chavane F. (2017) Neural field model to reconcile structure with function in primary visual cortex, PLOS Computational Biology, volume 13, no. 10, pages e1005821-e1005821, DOI:10.1371/journal.pcbi.1005821.
• Ashwin P, Creaser J, Tsaneva-Atanasova K. (2017) Fast and slow domino regimes in transient network dynamics, Phys Rev E, volume 96, no. 5-1, DOI:10.1103/PhysRevE.96.052309. [PDF]
• Pratap A, Garner KL, Voliotis M, Tsaneva-Atanasova K, McArdle CA. (2017) Authors response to communication about mathematical modeling of gonadotropin-releasing hormone signaling, Molecular and Cellular Endocrinology, DOI:10.1016/j.mce.2017.09.035. [PDF]
• Cohen L, Khoramshahi M, Salesse RN, Bortolon C, Slowinski PM, Zhai C, Tsaneva-Atanasova K, di Bernardo M, Capdevielle D, Marin L. (2017) Influence of facial feedback and mind perception during a cooperative human-robot task in schizophrenia, Scientific Reports, volume 7(1), pages 15023-15023, DOI:10.1038/s41598-017-14773-3.
• Medathati NVK, Rankin J, Meso AI, Kornprobst P, Masson GS. (2017) Recurrent network dynamics reconciles visual motion segmentation and integration, Scientific Reports, volume 7, no. 1, article no. 11270, DOI:10.1038/s41598-017-11373-z.
• Rahi SJ, Larsch J, Pecani K, Katsov AY, Mansouri N, Tsaneva-Atanasova K, Sontag ED, Cross FR. (2017) Oscillatory stimuli differentiate adapting circuit topologies, Nature Methods, volume 14(10), pages 1010-1016, DOI:10.1038/nmeth.4408. [PDF]
• Lopes MA, Richardson MP, Abela E, Rummel C, Schindler K, Goodfellow M, Terry JR. (2017) An optimal strategy for epilepsy surgery: Disruption of the rich-club?, PLoS Comput Biol, volume 13, no. 8, DOI:10.1371/journal.pcbi.1005637. [PDF]
• Coste A, Slowiński P, Tsaneva-Atanasova K, Bardy BG, Marin L. (2017) Mapping Individual Postural Signatures, Psychology Press, Studies in Perception and Action XIV: Nineteenth International Conference on Perception and Action, pages 105-109.
• Bonilla-Quintana M, Wedgwood KCA, O’Dea RD, Coombes S. (2017) An Analysis of Waves Underlying Grid Cell Firing in the Medial Enthorinal Cortex, The Journal of Mathematical Neuroscience, volume 7, pages n/a-n/a, article no. 9 (2017), DOI:10.1186/s13408-017-0051-7. [PDF]
• Voliotis M, Garner KL, Alobaid H, Tsaneva-Atanasova K, McArdle CA. (2017) Gonadotropin-releasing hormone signaling: An information theoretic approach, Molecular and Cellular Endocrinology, volume 463, pages 106-115, DOI:10.1016/j.mce.2017.07.028. [PDF]
• Li H-H, Rankin J, Rinzel J, Carrasco M, Heeger DJ. (2017) Attention model of binocular rivalry, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, volume 114, no. 30, pages E6192-E6201, DOI:10.1073/pnas.1620475114. [PDF]
• Spiga F, Zavala E, Walker JJ, Zhao Z, Terry JR, Lightman SL. (2017) Dynamic responses of the adrenal steroidogenic regulatory network, Proc Natl Acad Sci U S A, volume 114, no. 31, pages E6466-E6474, DOI:10.1073/pnas.1703779114. [PDF]
• Rankin J, Osinga HM. (2017) Parameter-dependent behaviour of periodic channels in a locus of boundary crisis, EUROPEAN PHYSICAL JOURNAL-SPECIAL TOPICS, volume 226, no. 9, pages 1739-1750, DOI:10.1140/epjst/e2017-70048-x. [PDF]
• Y. Shen, P. Tino, K. Tsaneva-Atanasova. (2017) Classification of sparsely and irregularly sampled time series: A learning in model space approach, 2017 International Joint Conference on Neural Networks (IJCNN), Anchorage, Ak, Usa, 14th - 19th May 2017, DOI:10.1109/IJCNN.2017.7966321.
• Voliotis M, Garner KL, Alobaid H, Tsaneva-Atanasova K, McArdle CA. (2017) Mutual information estimation - MATLAB code.
• Granados AA, Crane MM, Montano-Gutierrez LF, Tanaka RJ, Voliotis M, Swain PS. (2017) Distributing tasks via multiple input pathways increases cellular survival in stress, Elife, volume 6, DOI:10.7554/eLife.21415. [PDF]
• Betterton RT, Broad LM, Tsaneva-Atanasova K, Mellor JR. (2017) Acetylcholine modulates gamma frequency oscillations in the hippocampus by activation of muscarinic M1 receptors, European Journal of Neuroscience, DOI:10.1111/ejn.13582. [PDF]
• Voliotis M, Liverpool TB. (2017) Statistical mechanics of tuned cell signalling: Sensitive collective response by synthetic biological circuits, Journal of Statistical Mechanics: Theory and Experiment, volume 2017, no. 3, DOI:10.1088/1742-5468/aa58ad.
• Rankin J, Osborn Popp PO, Rinzel J. (2017) Stimulus pauses and perturbations differentially delay or promote the segregation of auditory objects: psychoacoustics and modeling, Frontiers in Neuroscience, volume 11, pages 198-198, DOI:10.3389/fnins.2017.00198.
• Goodfellow M, Rummel C, Abela E, Richardson MP, Schindler K, Terry JR. (2017) Computer models to inform epilepsy surgery strategies: Prediction of postoperative outcome, Brain, volume 140, no. 5, DOI:10.1093/brain/awx067.
• Shen Y, Tino P, Tsaneva-Atanasova K. (2017) Classification framework for partially observed dynamical systems, Physical Review E, volume 95, no. 4, pages 043303-043303-21, DOI:10.1103/PhysRevE.95.043303. [PDF]
• Romanò N, McClafferty H, Walker JJ, Le Tissier P, Shipston MJ. (2017) Heterogeneity of Calcium Responses to Secretagogues in Corticotrophs From Male Rats, Endocrinology, volume 158, no. 6, pages 1849-1858, DOI:10.1210/en.2017-00107. [PDF]
• Garner KL, Voliotis M, Alobaid H, Perrett RM, Pham T, Tsaneva-Atanasova K, McArdle CA. (2017) Information Transfer via Gonadotropin-Releasing Hormone Receptors to ERK and NFAT: Sensing GnRH and Sensing Dynamics, Journal of the Endocrine Society, volume 1, pages 260-277, article no. 4, DOI:10.1210/js.2016-1096.
• C. Zhai, F. Alderisio, P. Słowiński, K. Tsaneva-Atanasova, M. di Bernardo. (2017) Design and Validation of a Virtual Player for Studying Interpersonal Coordination in the Mirror Game, IEEE Transactions on Cybernetics, volume PP, no. 99, pages 1-12, DOI:10.1109/TCYB.2017.2671456.
• Garner KL, Tsaneva-Atanasova K, McArdle CA. (2017) GnRH Action, Endocrinology of the Testis and Male Reproduction, Springer International Publishing, 1-36, DOI:10.1007/978-3-319-29456-8_2-1. [PDF]
• Avitable D, Wedgwood KCA. (2017) Macroscopic coherent structures in a stochastic neural network: from interface dynamics to coarse-grained bifurcation analysis, Journal of Mathematical Biology, volume 75, pages 885-928, article no. 4, DOI:10.1007/s00285-016-1070-9.
• Jedynak M, Pons AJ, Garcia-Ojalvo J, Goodfellow M. (2017) Temporally correlated fluctuations drive epileptiform dynamics, NeuroImage, volume 146, pages 188-196, DOI:10.1016/j.neuroimage.2016.11.034.
• Slowinski PM, Alderisio F, Zhai C, Shen Y, Tino P, Bortolon C, Capdevielle D, Cohen L, Khoramshahi M, Billard A. (2017) Unravelling socio-motor biomarkers in schizophrenia, npj Schizophrenia, volume 3, DOI:10.1038/s41537-016-0009-x.
• Pratap A, Garner KL, Voliotis M, Tsaneva-Atanasova K, McArdle CA. (2017) Mathematical modeling of gonadotropin-releasing hormone signaling, Mol Cell Endocrinol, volume 449, pages 42-55, DOI:10.1016/j.mce.2016.08.022. [PDF]
• Oza HB, Pandey R, Roper D, Al-Nuaimi Y, Spurgeon SK, Goodfellow M. (2017) Modelling and finite-time stability analysis of psoriasis pathogenesis, International Journal of Control, volume 90, pages 1664-1677, article no. 8, DOI:10.1080/00207179.2016.1217566. [PDF]

2016

• Stirrat L, Walker J, Norman J, Lightman S, Walker B, Reynolds R. (2016) Role of cortisol ultradian pulsatility in human pregnancy: a case-control study, The Lancet, volume 387, DOI:10.1016/s0140-6736(16)00480-3.
• Marius V, Robert M-H, Paul W, Roman B, Dan L. (2016) Virtual Reality Visualisation of a Biologically Realistic Anatomical and Functional Model of the Tadpole Spinal Cord, Frontiers in Neuroinformatics, volume 10, DOI:10.3389/conf.fninf.2016.20.00040.
• Wan KY, Goldstein RE. (2016) Coordinated beating of algal flagella is mediated by basal coupling, Proceedings of the National Academy of Sciences, volume 113, no. 20, DOI:10.1073/pnas.1518527113.
• Meso AI, Rankin J, Faugeras O, Kornprobst P, Masson GS. (2016) The relative contribution of noise and adaptation to competition during tri-stable motion perception, Journal of Vision, volume 16, no. 15, pages 6-6, DOI:10.1167/16.15.6.
• Wedgwood KCA, Richardson SJ, Morgan NG, Tsaneva-Atanasova K. (2016) Spatiotemporal dynamics of insulitis in human type 1 diabetes, Frontiers in Physiology, volume 7, article no. DEC, DOI:10.3389/fphys.2016.00633.
• Sharpee TO, Destexhe A, Kawato M, Sekulić V, Skinner FK, Wójcik DK, Chintaluri C, Cserpán D, Somogyvári Z, Kim JK. (2016) 25th Annual Computational Neuroscience Meeting: CNS-2016, BMC Neurosci, volume 17 Suppl 1, no. Suppl 1, DOI:10.1186/s12868-016-0283-6. [PDF]
• Jedynak M, Pons AJ, Garcia-Ojalvo J, Goodfellow M. (2016) Identification of epileptogenic rhythms in a mesoscopic neuronal model, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), volume 9886 LNCS.
• Phillips NE, Manning CS, Pettini T, Biga V, Marinopoulou E, Stanley P, Boyd J, Bagnall J, Paszek P, Spiller DG. (2016) Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation, eLife, volume 5, DOI:10.7554/elife.16118.
• Zhai C, Alderisio F, Słowiński P, Tsaneva-Atanasova K, di Bernardo M. (2016) Design of a Virtual Player for Joint Improvisation with Humans in the Mirror Game, PLoS ONE, volume 11, no. 4, pages e0154361-e0154361, DOI:10.1371/journal.pone.0154361. [PDF]
• Stothart G, Petkov G, Kazanina N, Goodfellow M, Tait L, Brown J. (2016) Graph-theoretical measures provide translational markers of large-scale brain network disruption in human dementia patients and animal models of dementia, International Journal of Psychophysiology, volume 108, pages 71-71, DOI:10.1016/j.ijpsycho.2016.07.232.
• Movassagh M, Alomran N, Mudvari P, Dede M, Dede C, Kowsari K, Restrepo P, Cauley E, Bahl S, Li M. (2016) RNA2DNAlign: nucleotide resolution allele asymmetries through quantitative assessment of RNA and DNA paired sequencing data, Nucleic Acids Research, DOI:10.1093/nar/gkw757. [PDF]
• Słowiński P, Tsaneva-Atanasova K, Krauskopf B. (2016) Effects of time-delay in a model of intra- and inter-personal motor coordination, The European Physical Journal Special Topics, volume 225, no. 13, pages 2591-2600, DOI:10.1140/epjst/e2015-50327-6. [PDF]
• Schindler K, Rummel C, Andrzejak RG, Goodfellow M, Zubler F, Abela E, Wiest R, Pollo C, Steimer A, Gast H. (2016) Ictal time-irreversible intracranial EEG signals as markers of the epileptogenic zone, Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology, volume 127, no. 9, pages 3051-3058, DOI:10.1016/j.clinph.2016.07.001.
• Schmidt H, Woldman W, Goodfellow M, Chowdhury FA, Koutroumanidis M, Jewell S, Richardson MP, Terry JR. (2016) A computational biomarker of idiopathic generalized epilepsy from resting state EEG, Epilepsia, volume 57, no. 10, pages e200-e204, DOI:10.1111/epi.13481.
• Goodfellow M, Rummel C, Abela E, Richardson MP, Schindler K, Terry JR. (2016) Estimation of brain network ictogenicity predicts outcome from epilepsy surgery, Scientific Reports, volume 6, DOI:10.1038/srep29215.
• Avitabile D, Słowiński P, Bardy B, Tsaneva-Atanasova K. (2016) Beyond in-phase and anti-phase coordination in a model of joint action, Biological Cybernetics, volume 110(2), pages 201-216, DOI:10.1007/s00422-016-0691-9. [PDF]
• Griffith T, Tsaneva-Atanasova K, Mellor JR. (2016) Control of Ca2+ Influx and Calmodulin Activation by SK-Channels in Dendritic Spines, PLoS Comput Biol, volume 12, no. 5, pages e1004949-e1004949, DOI:10.1371/journal.pcbi.1004949. [PDF]
• Richards DM, Endres RG. (2016) Target shape dependence in a simple model of receptor-mediated endocytosis and phagocytosis, Proceedings of the National Academy of Sciences of the United States of America, volume 113, pages 6113-6118, DOI:10.1073/pnas.1521974113.
• Mina P, Tsaneva-Atanasova K, Bernardo MD. (2016) Entrainment and Control of Bacterial Populations: An in Silico Study over a Spatially Extended Agent Based Model, ACS Synthetic Biology, volume 5, no. 7, pages 639-653, DOI:10.1021/acssynbio.5b00243.
• Atherton LA, Prince LY, Tsaneva-Atanasova K. (2016) Bifurcation analysis of a two-compartment hippocampal pyramidal cell model, Journal of Computational Neuroscience, pages 1-16, DOI:10.1007/s10827-016-0606-8. [PDF]
• Słowiński P, Zhai C, Alderisio F, Salesse R, Gueugnon M, Marin L, Bardy BG, di Bernardo M, Tsaneva-Atanasova K. (2016) Dynamic similarity promotes interpersonal coordination in joint action, Journal of The Royal Society Interface, volume 13, no. 116, DOI:10.1098/rsif.2015.1093. [PDF]
• Terry JR, Walker JJ, Spiga F, Lightman SL. (2016) Dynamics of the HPA axis: A systems modelling approach, Computational Neuroendocrinology, Wiley, 252-283.
• Gommer F, Brown LP, Wedgwood KCA. (2016) Analytical method using gamma functions for determining areas of power elliptical shapes for use in geometrical textile models, COMPOSITES PART A-APPLIED SCIENCE AND MANUFACTURING, volume 81, pages 222-224, DOI:10.1016/j.compositesa.2015.11.031. [PDF]
• Booth CA, Witton J, Nowacki J, Tsaneva-Atanasova K, Jones MW, Randall AD, Brown JT. (2016) Altered Intrinsic Pyramidal Neuron Properties and Pathway-Specific Synaptic Dysfunction Underlie Aberrant Hippocampal Network Function in a Mouse Model of Tauopathy, J Neurosci, volume 36, no. 2, pages 350-363, DOI:10.1523/JNEUROSCI.2151-15.2016. [PDF]
• Garner KL, Perrett RM, Voliotis M, Bowsher C, Pope GR, Pham T, Caunt CJ, Tsaneva-Atanasova K, McArdle CA. (2016) Information Transfer in Gonadotropin-releasing Hormone (GnRH) Signaling, Journal of Biological Chemistry, volume 291, no. 5, pages 2246-2259, DOI:10.1074/jbc.m115.686964.
• Booth CA, Ridler T, Murray TK, Ward MA, de Groot E, Goodfellow M, Phillips KG, Randall AD, Brown JT. (2016) Electrical and Network Neuronal Properties Are Preferentially Disrupted in Dorsal, But Not Ventral, Medial Entorhinal Cortex in a Mouse Model of Tauopathy, J Neurosci, volume 36, no. 2, pages 312-324, DOI:10.1523/JNEUROSCI.2845-14.2016. [PDF]

2015

• Merrison-Hort R, Davis O, Borisyuk R. (2015) The functional significance of fasciculation and repulsion in a computational model of axon growth, BMC Neuroscience, volume 16, no. Suppl 1, DOI:10.1186/1471-2202-16-s1-p17.
• Yousif N, Mace M, Pavese N, Borisyuk R, Nandi D, Bain P. (2015) A network model of neural activity in essential tremor, BMC Neuroscience, volume 16, no. Suppl 1, DOI:10.1186/1471-2202-16-s1-p7.
• Garner K, Perrett R, Voliotis M, Pham T, Tsaneva-Atanasova K, McArdle C. (2015) An information theoretic approach to GnRH signalling, Endocrine Abstracts, DOI:10.1530/endoabs.37.ep163.
• Garner K, Perrett R, Voliotis M, Pham T, Tsaneva-Atanasova K, McArdle C. (2015) Information transfer in GnRH signalling: ERK-mediated feedback loops control hormone sensing, Endocrine Abstracts, DOI:10.1530/endoabs.38.p359.
• Voliotis M, Thomas P, Grima R, Bowsher CG. (2015) Stochastic Simulation of Biomolecular Networks in Dynamic Environments, DOI:10.48550/arxiv.1511.01268.
• Słowiński P, Tsaneva-Atanasova K, Krauskopf B. (2015) Effects of time-delay in a model of intra- and inter-personal motor coordination, DOI:10.48550/arxiv.1512.04426.
• Avitabile D, Słowiński P, Bardy B, Tsaneva-Atanasova K. (2015) Beyond in-phase and anti-phase coordination in a model of joint action, DOI:10.48550/arxiv.1512.08224.
• Słowiński P, Zhai C, Alderisio F, Salesse R, Gueugnon M, Marin L, Bardy BG, di Bernardo M, Tsaneva-Atanasova K. (2015) Dynamic similarity promotes interpersonal coordination in joint-action, DOI:10.48550/arxiv.1507.00368.
• Zhai C, Alderisio F, Slowinski P, Tsaneva-Atanasova K, di Bernardo M. (2015) Design and Validation of a Virtual Player for Studying Interpersonal Coordination in the Mirror Game, DOI:10.48550/arxiv.1509.05881.
• Griffith T, Mellor J, Tsaneva-Atanasova K. (2015) A spatiotemporal model of spine calcium dynamics in the hippocampus, BMC neuroscience, volume 16, no. Suppl 1, pages P268-P268, DOI:10.1186/1471-2202-16-s1-p268.
• Warburton JM, Whitcomb DJ, Tsaneva-Atanasova K, Cho K. (2015) Investigating the effects of beta-amyloid on hippocampal signalling in Alzheimer's disease, BMC neuroscience, volume 16, no. Suppl 1, pages P34-P34, DOI:10.1186/1471-2202-16-s1-p34.
• Betterton R, Mellor J, Tsaneva-Atanasova K. (2015) Modulation of hippocampal gamma oscillations by acetylcholine: insights from mathematical and in vitro optogenetic models, BMC neuroscience, volume 16, no. Suppl 1, pages P267-P267, DOI:10.1186/1471-2202-16-s1-p267.
• Zhai C, Alderisio F, Tsaneva-Atanasova K, di Bernardo M. (2015) A model predictive approach to control the motion of a virtual player in the mirror game, 2015 54th IEEE Conference on Decision and Control (CDC), 15th - 18th Dec 2015, 2015 54th IEEE Conference on Decision and Control (CDC), DOI:10.1109/cdc.2015.7402695.
• Griffith T, Mellor J, Tsaneva-Atanasova K. (2015) Spike-Timing Dependent Plasticity (STDP), Biophysical Models, Encyclopedia of Computational Neuroscience, Springer New York, 2803-2807, DOI:10.1007/978-1-4614-6675-8_359.
• Voliotis M. (2015) Toy model of ERK signalling, DOI:10.1074/jbc.M115.686964.
• Rankin J, Sussman E, Rinzel J. (2015) Neuromechanistic Model of Auditory Bistability, PLOS Computational Biology, volume 11, no. 11, pages e1004555-e1004555, DOI:10.1371/journal.pcbi.1004555.
• Richards DM, Saunders TE. (2015) Spatiotemporal Analysis of Different Mechanisms for Interpreting Morphogen Gradients, Biophysical Journal, volume 108, no. 8, pages 2061-2073, DOI:10.1016/j.bpj.2015.03.015.
• Micali G, Aquino G, Richards DM, Endres RG. (2015) Accurate Encoding and Decoding by Single Cells: Amplitude Versus Frequency Modulation, PLOS Computational Biology, volume 11, no. 6, pages e1004222-e1004222, DOI:10.1371/journal.pcbi.1004222.
• Słowiński P, MacKay RS. (2015) Phase Diagrams of Majority Voter Probabilistic Cellular Automata, Journal of Statistical Physics, volume 159, no. 1, pages 43-61, DOI:10.1007/s10955-014-1156-y.
• Slowiński P, Krauskopf B, Wieczorek S. (2015) Mode structure of a semiconductor laser with feedback from two external filters, Discrete and Continuous Dynamical Systems - Series B, volume 20, no. 2, pages 519-586, DOI:10.3934/dcdsb.2015.20.519.
• Voliotis M, Thomas P, Grima R, Bowsher CG. (2015) Stochastic Simulation of Biomolecular Networks in Dynamic Environments. [PDF]
• Zhai C, Alderisio A, Tsaneva-Atanasova KT, di Bernardo M. (2015) A Model Predictive Approach to Control the Motion of a Virtual Player in the Mirror Game, 54th Annual Conference on Decision and Control (CDC), Osaka, Japan, 15th - 18th Dec 2015, Decision and Control (CDC), 2015 IEEE 54th Annual Conference on, pages 3175-3180, DOI:10.13140/RG.2.1.3627.3123.
• Tamagnini F, Novelia J, Kerrigan TL, Brown JT, Tsaneva-Atanasova KT, Randall AD. (2015) Altered intrinsic excitability of hippocampal CA1 pyramidal neurons in aged PDAPP mice, Front. Cell. Neurosci, volume 9, article no. 372, DOI:10.3389/fncel.2015.00372.
• Gommer F, Wedgwood KCA, Brown LP. (2015) Stochastic reconstruction of filament paths in fibre bundles based on two-dimensional input data, COMPOSITES PART A-APPLIED SCIENCE AND MANUFACTURING, volume 76, pages 262-271, DOI:10.1016/j.compositesa.2015.05.022. [PDF]
• Gibbison B, Spiga F, Walker JJ, Russell GM, Stevenson K, Kershaw Y, Zhao Z, Henley D, Angelini GD, Lightman SL. (2015) Dynamic pituitary-adrenal interactions in response to cardiac surgery, United States, Crit Care Med, volume 43, no. 4, pages 791-800, DOI:10.1097/CCM.0000000000000773. [PDF]
• Matyjaszkiewicz A, Venturi E, O’Brien F, Iida T, Nishi M, Takeshima H, Tsaneva-Atanasova KT, Sitsapesan R. (2015) Subconductance Gating and Voltage Sensitivity of Sarcoplasmic Reticulum K+ Channels: A Modeling Approach, Biophysical Journal, volume 109, no. 2, pages 265-276, DOI:10.1016/j.bpj.2015.06.020.
• Iosub R, Avitabile D, Grant L, Tsaneva-Atanasova K, Kennedy H. (2015) Calcium-Induced Calcium Release during Action Potential Firing in Developing Inner Hair Cells, Biophysical Journal, volume 108, no. 5, pages 1003-1012, DOI:10.1016/j.bpj.2014.11.3489. [PDF]
• Walker JJ, Spiga F, Gupta R, Zhao Z, Lightman SL, Terry JR. (2015) Rapid intra-adrenal feedback regulation of glucocorticoid synthesis, J R Soc Interface, volume 12, no. 102, DOI:10.1098/rsif.2014.0875. [PDF]
• Vine SJ, Uiga L, Lavric A, Moore LJ, Tsaneva-Atanasova K, Wilson MR. (2015) Individual reactions to stress predict performance during a critical aviation incident, Anxiety Stress Coping, volume 28, no. 4, pages 467-477, DOI:10.1080/10615806.2014.986722. [PDF]

2014

• Merrison-Hort R, Borisyuk R. (2014) The dynamic separation of pallidal neurons into anti-phase oscillatory groups under Parkinsonian conditions in a computational model, BMC Neuroscience, volume 15, no. Suppl 1, DOI:10.1186/1471-2202-15-s1-o18.
• Borisyuk R, Merrison-Hort R. (2014) Bifurcation analysis of anti-phase oscillations and synchrony in the tadpole central pattern generator, BMC Neuroscience, volume 15, no. Suppl 1, DOI:10.1186/1471-2202-15-s1-p94.
• Bowsher CG, Voliotis M. (2014) Mutual Information and Conditional Mean Prediction Error, DOI:10.48550/arxiv.1407.7165.
• Gibbison B, Walker J, Russell G, Stevenson K, Kershaw Y, Asimakopoulos G, Angelini G, Lightman S. (2014) Cardiac surgery alters the sensitivity of the dynamic interaction between the pituitary and adrenal glands, Critical Care, volume 18, no. Suppl 1, DOI:10.1186/cc13625.
• Borisyuk R, Al Azad AK, Conte D, Roberts A, Soffe SR. (2014) A developmental approach to predicting neuronal connectivity from small biological datasets: a gradient-based neuron growth model, PLoS One, volume 9, no. 2, DOI:10.1371/journal.pone.0089461. [PDF]
• Li W-C, Merrison-Hort R, Zhang H-Y, Borisyuk R. (2014) The generation of antiphase oscillations and synchrony by a rebound-based vertebrate central pattern generator, J Neurosci, volume 34, no. 17, pages 6065-6077, DOI:10.1523/JNEUROSCI.4198-13.2014. [PDF]
• Burylko O, Kazanovich Y, Borisyuk R. (2014) Bifurcation study of phase oscillator systems with attractive and repulsive interaction, Phys Rev E Stat Nonlin Soft Matter Phys, volume 90, no. 2, DOI:10.1103/PhysRevE.90.022911. [PDF]
• Brumley DR, Wan KY, Polin M, Goldstein RE. (2014) Flagellar synchronization through direct hydrodynamic interactions, eLife, volume 3, DOI:10.7554/elife.02750.
• Wan KY, Leptos KC, Goldstein RE. (2014) Lag, lock, sync, slip: the many ‘phases’ of coupled flagella, Journal of The Royal Society Interface, volume 11, no. 94, pages 20131160-20131160, DOI:10.1098/rsif.2013.1160.
• Wan KY, Goldstein RE. (2014) Rhythmicity, Recurrence, and Recovery of Flagellar Beating, Physical Review Letters, volume 113, no. 23, article no. 238103, DOI:10.1103/physrevlett.113.238103.
• Rankin J, Avitabile D, Baladron J, Faye G, Lloyd DJB. (2014) Continuation of Localized Coherent Structures in Nonlocal Neural Field Equations, SIAM Journal on Scientific Computing, volume 36, no. 1, pages B70-B93, DOI:10.1137/130918721.
• Richards DM, Endres RG. (2014) The Mechanism of Phagocytosis: Two Stages of Engulfment, Biophysical Journal, volume 107, no. 7, pages 1542-1553, DOI:10.1016/j.bpj.2014.07.070.
• Roberts A, Conte D, Hull M, Merrison-Hort R, al Azad AK, Buhl E, Borisyuk R, Soffe SR. (2014) Can Simple Rules Control Development of a Pioneer Vertebrate Neuronal Network Generating Behavior?, JOURNAL OF NEUROSCIENCE, volume 34, no. 2, pages 608-621, DOI:10.1523/JNEUROSCI.3248-13.2014. [PDF]
• Voliotis M, Perrett RM, McWilliams C, McArdle CA, Bowsher CG. (2014) Information transfer by leaky, heterogeneous, protein kinase signaling systems, Proc Natl Acad Sci U S A, volume 111, no. 3, pages E326-E333, DOI:10.1073/pnas.1314446111. [PDF]
• Bowsher CG, Voliotis M. (2014) Mutual Information and Conditional Mean Prediction Error. [PDF]
• Chao Zhai, Alderisio F, Tsaneva-Atanasova K, di Bernardo M. (2014) Adaptive tracking control of a virtual player in the mirror game, Decision and Control (CDC), 2014 IEEE 53rd Annual Conference on, Decision and Control (CDC), 2014 IEEE 53rd Annual Conference on, pages 7005-7010.
• Roper D, Al-nuaimi Y, Oza H, Goodfellow M, Spurgeon S. (2014) A systems biological model of chronic plaque psoriasis captures dynamics of known treatments, BRITISH JOURNAL OF DERMATOLOGY, volume 171, no. 6, pages E146-E146. [PDF]
• Petkov G, Goodfellow M, Richardson MP, Terry JR. (2014) A critical role for network structure in seizure onset: a computational modeling approach, Front Neurol, volume 5, DOI:10.3389/fneur.2014.00261. [PDF]
• Taylor PN, Wang Y, Goodfellow M, Dauwels J, Moeller F, Stephani U, Baier G. (2014) A computational study of stimulus driven epileptic seizure abatement, PLoS One, volume 9, no. 12, DOI:10.1371/journal.pone.0114316. [PDF]
• Slowinski P, Rooke E, Di Bernardo M, Tsaneva-Atanasova K. (2014) Kinematic characteristics of motion in the mirror game, Systems, Man and Cybernetics (SMC), 2014 IEEE International Conference on, Systems, Man and Cybernetics (SMC), 2014 IEEE International Conference on, pages 748-753, DOI:10.1109/SMC.2014.6974000.
• Zhai C, Alderisio F, Tsaneva-Atanasova K, Di Bernardo M. (2014) A novel cognitive architecture for a human-like virtual player in the mirror game, Systems, Man and Cybernetics (SMC), 2014 IEEE International Conference on, Systems, Man and Cybernetics (SMC), 2014 IEEE International Conference on, pages 754-759, DOI:10.1109/SMC.2014.6974001.
• Griffith T, Mellor J, Tsaneva-Atanasova K. (2014) Spike Timing-Dependent Plasticity (STDP), Biophysical Models, Encyclopedia of Computational Neuroscience, Springer New York, 1-5, DOI:10.1007/978-1-4614-7320-6_359-1. [PDF]
• Wang Y, Goodfellow M, Taylor PN, Baier G. (2014) Dynamic mechanisms of neocortical focal seizure onset, PLoS Comput Biol, volume 10, no. 8, DOI:10.1371/journal.pcbi.1003787. [PDF]
• Spiga F, Walker JJ, Terry JR, Lightman SL. (2014) HPA axis-rhythms, Compr Physiol, volume 4, no. 3, pages 1273-1298, DOI:10.1002/cphy.c140003. [PDF]
• Goodfellow M, Phillips NE, Manning C, Galla T, Papalopulu N. (2014) microRNA input into a neural ultradian oscillator controls emergence and timing of alternative cell states, Nat Commun, volume 5, DOI:10.1038/ncomms4399. [PDF]
• Perrett R, Voliotis M, Armstrong S, Pope G, Tsaneva-Atanasova K, McArdle C. (2014) Systems approaches to understanding GnRH signalling, Endocrine Abstracts, volume 34, DOI:10.1530/endoabs.34.S1.1.
• Perrett RM, Voliotis M, Armstrong SP, Fowkes RC, Pope GR, Tsaneva-Atanasova K, McArdle CA. (2014) Pulsatile Hormonal Signaling to Extracellular Signal-Regulated Kinase: Exploring System Sensitivity to Gonadotropin-Releasing Hormone Pulse Frequency and Width, Journal of Biological Chemistry, volume 289(11), pages 7873-7883, DOI:10.1074/jbc.M113.532473.
• Müller MF, Rummel C, Goodfellow M, Schindler K. (2014) Standing waves as an explanation for generic stationary correlation patterns in noninvasive EEG of focal onset seizures, Brain Connect, volume 4, no. 2, pages 131-144, DOI:10.1089/brain.2013.0192. [PDF]

2013

• Matyjaszkiewicz A, Venturi E, Yamazaki D, Nishi M, Tsaneva-Atanasova K, Takeshima H, Sitsapesan R. (2013) Voltage-Dependent Stochastic Gating Models of TRIC-B Channels, BIOPHYSICAL JOURNAL, volume 104, no. 2, pages 104A-104A, DOI:10.1016/j.bpj.2012.11.609. [PDF]
• Kazanovich Y, Burylko O, Borisyuk R. (2013) Competition for synchronization in a phase oscillator system, PHYSICA D-NONLINEAR PHENOMENA, volume 261, pages 114-124, DOI:10.1016/j.physd.2013.07.008. [PDF]
• Borisyuk R, Chik D, Kazanovich Y, da Silva Gomes J. (2013) Spiking neural network model for memorizing sequences with forward and backward recall, Biosystems, volume 112, no. 3, pages 214-223, DOI:10.1016/j.biosystems.2013.03.018. [PDF]
• Merrison-Hort R, Yousif N, Njap F, Hofmann UG, Burylko O, Borisyuk R. (2013) An interactive channel model of the Basal Ganglia: bifurcation analysis under healthy and parkinsonian conditions, J Math Neurosci, volume 3, no. 1, DOI:10.1186/2190-8567-3-14. [PDF]
• Merrison-Hort R, Borisyuk R. (2013) The emergence of two anti-phase oscillatory neural populations in a computational model of the Parkinsonian globus pallidus, Front Comput Neurosci, volume 7, DOI:10.3389/fncom.2013.00173. [PDF]
• Leptos KC, Wan KY, Polin M, Tuval I, Pesci AI, Goldstein RE. (2013) Antiphase Synchronization in a Flagellar-Dominance Mutant ofChlamydomonas, Physical Review Letters, volume 111, no. 15, article no. 158101, DOI:10.1103/physrevlett.111.158101.
• Rankin J, Meso AI, Masson GS, Faugeras O, Kornprobst P. (2013) Bifurcation study of a neural field competition model with an application to perceptual switching in motion integration, Journal of Computational Neuroscience, volume 36, no. 2, pages 193-213, DOI:10.1007/s10827-013-0465-5.
• Faye G, Rankin J, J B Lloyd D. (2013) Localized radial bumps of a neural field equation on the Euclidean plane and the Poincaré disc, Nonlinearity, volume 26, no. 2, pages 437-478, DOI:10.1088/0951-7715/26/2/437.
• Richards D, Berry S, Howard M. (2013) Illustrations of Mathematical Modeling in Biology: Epigenetics, Meiosis, and an Outlook, Cold Spring Harbor Symposia on Quantitative Biology, volume 77, no. 0, pages 175-181, DOI:10.1101/sqb.2013.77.015941.
• Wang Y, Goodfellow M, Taylor PN, Garry DJ, Baier G. (2013) Computational modelling of microseizures and focal seizure onset, Recent Advance in Predicting and Preventing Epileptic Sezures, 83-98, DOI:10.1142/9789814525350_0006.
• Bowsher CG, Voliotis M, Swain PS. (2013) The Fidelity of Dynamic Signaling by Noisy Biomolecular Networks, PLoS Computational Biology, volume 9, no. 3, DOI:10.1371/journal.pcbi.1002965.
• Wedgwood KCA, Lin KK, Thul R, Coombes S. (2013) Phase-amplitude descriptions of neural oscillator models, The Journal of Mathematical Neuroscience 2013, 3:2. [PDF]
• Osinga HM, Tsaneva-Atanasova KT. (2013) Geometric analysis of transient bursts, CHAOS, volume 23, no. 4, article no. ARTN 046107, DOI:10.1063/1.4826655. [PDF]
• Park SY, Walker JJ, Johnson NW, Zhao Z, Lightman SL, Spiga F. (2013) Constant light disrupts the circadian rhythm of steroidogenic proteins in the rat adrenal gland, Mol Cell Endocrinol, volume 371, no. 1-2, pages 114-123, DOI:10.1016/j.mce.2012.11.010. [PDF]
• Rummel C, Goodfellow M, Gast H, Hauf M, Amor F, Stibal A, Mariani L, Wiest R, Schindler K. (2013) A systems-level approach to human epileptic seizures, Neuroinformatics, volume 11, no. 2, pages 159-173, DOI:10.1007/s12021-012-9161-2. [PDF]
• Taylor PN, Goodfellow M, Wang Y, Baier G. (2013) Towards a large-scale model of patient-specific epileptic spike-wave discharges, Biol Cybern, volume 107, no. 1, pages 83-94, DOI:10.1007/s00422-012-0534-2. [PDF]
• Goodfellow M, Glendinning P. (2013) Mechanisms of intermittent state transitions in a coupled heterogeneous oscillator model of epilepsy, J Math Neurosci, volume 3, no. 1, DOI:10.1186/2190-8567-3-17. [PDF]
• Doyle OM, Tsaneva-Atansaova K, Harte J, Tiffin PA, Tino P, Díaz-Zuccarini V. (2013) Bridging Paradigms: Hybrid Mechanistic-Discriminative Predictive Models, Biomedical Engineering, IEEE Transactions on, volume 60, no. 3, pages 735-742, DOI:10.1109/TBME.2013.2244598.
• Champneys A, Tsaneva-Atanasova K. (2013) Dynamical Systems Theory, Bifurcation Analysis, Encyclopedia of Systems Biology, Springer New York, 632-637, DOI:10.1007/978-1-4419-9863-7_270. [PDF]
• Nowacki J, Osinga HM, Tsaneva-Atanasova KT. (2013) Continuation-Based Numerical Detection of After-Depolarization and Spike-Adding Thresholds, Neural Computation, volume 25, no. 4, pages 877-900, DOI:10.1162/neco_a_00425.
• Perrett RM, Fowkes RC, Caunt CJ, Tsaneva-Atanasova K, Bowsher CG, McArdle CA. (2013) Signaling to extracellular signal-regulated kinase from ErbB1 kinase and protein kinase C: feedback, heterogeneity, and gating, J Biol Chem, volume 288, no. 29, pages 21001-21014, DOI:10.1074/jbc.M113.455345. [PDF]
• Tigaret CM, Tsaneva-Atanasova K, Collingridge GL, Mellor JR. (2013) Wavelet transform-based de-noising for two-photon imaging of synaptic Ca2+ transients, Biophys J, volume 104, no. 5, pages 1006-1017, DOI:10.1016/j.bpj.2013.01.015. [PDF]
• Mina P, di Bernardo M, Savery NJ, Tsaneva-Atanasova K. (2013) Modelling emergence of oscillations in communicating bacteria: a structured approach from one to many cells, J R Soc Interface, volume 10, no. 78, DOI:10.1098/rsif.2012.0612. [PDF]
• Venturi E, Matyjaszkiewicz A, Pitt SJ, Tsaneva-Atanasova K, Nishi M, Yamazaki D, Takeshima H, Sitsapesan R. (2013) TRIC-B channels display labile gating: evidence from the TRIC-A knockout mouse model, Pflugers Arch, volume 465, no. 8, pages 1135-1148, DOI:10.1007/s00424-013-1251-y. [PDF]

2012

• Da Silva Gomes J, Borisyuk R. (2012) Biological brain and binary code: Quality of coding for face recognition, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), volume 7552 LNCS, no. PART 1, pages 427-434, DOI:10.1007/978-3-642-33269-2_54.
• Burylko O, Kazanovich Y, Borisyuk R. (2012) Bifurcations in phase oscillator networks with a central element, PHYSICA D-NONLINEAR PHENOMENA, volume 241, no. 12, pages 1072-1089, DOI:10.1016/j.physd.2012.02.020. [PDF]
• Yousif N, Borisyuk R, Pavese N, Nandi D, Bain P. (2012) Spatiotemporal visualization of deep brain stimulation-induced effects in the subthalamic nucleus, Eur J Neurosci, volume 36, no. 2, pages 2252-2259, DOI:10.1111/j.1460-9568.2012.08086.x. [PDF]
• Flardh K, Richards DM, Hempel AM, Howard M, Buttner MJ. (2012) Regulation of apical growth and hyphal branching in Streptomyces, CURRENT OPINION IN MICROBIOLOGY, volume 15, no. 6, pages 737-743, DOI:10.1016/j.mib.2012:10.012. [PDF]
• Baier G, Goodfellow M, Taylor PN, Wang Y, Garry DJ. (2012) SPATIO-TEMPORAL MODELS TO PREDICT AND CONTROL EPILEPTIC SEIZURE DYNAMICS, EPILEPSIA, volume 53, pages 20-20. [PDF]
• Faye G, Rankin J, Chossat P. (2012) Localized states in an unbounded neural field equation with smooth firing rate function: a multi-parameter analysis, Journal of Mathematical Biology, volume 66, no. 6, pages 1303-1338, DOI:10.1007/s00285-012-0532-y.
• Rankin J, Tlapale É, Veltz R, Faugeras O, Kornprobst P. (2012) Bifurcation analysis applied to a model of motion integration with a multistable stimulus, Journal of Computational Neuroscience, volume 34, no. 1, pages 103-124, DOI:10.1007/s10827-012-0409-5.
• Hempel AM, Cantlay S, Molle V, Wang S-B, Naldrett MJ, Parker JL, Richards DM, Jung Y-G, Buttner MJ, Flärdh K. (2012) The Ser/Thr protein kinase AfsK regulates polar growth and hyphal branching in the filamentous bacteria Streptomyces, Proceedings of the National Academy of Sciences, volume 109, no. 35, DOI:10.1073/pnas.1207409109.
• Richards DM, Greer E, Martin AC, Moore G, Shaw PJ, Howard M. (2012) Quantitative Dynamics of Telomere Bouquet Formation, PLoS Computational Biology, volume 8, no. 12, pages e1002812-e1002812, DOI:10.1371/journal.pcbi.1002812.
• Voliotis M, Cohen N, Molina-París C, Liverpool TB. (2012) Proofreading of misincorporated nucleotides in DNA transcription, Physical Biology, volume 9, no. 3, DOI:10.1088/1478-3975/9/3/036002.
• Voliotis M, Cohen N, Molina-París C, Liverpool TB. (2012) Proofreading of misincorporated nucleotides in DNA transcription, Physical Biology, volume 9, no. 3, DOI:10.1088/1478-3975/9/3/036007.
• Voliotis M, Bowsher CG. (2012) The magnitude and colour of noise in genetic negative feedback systems, Nucleic Acids Research, volume 40, no. 15, pages 7084-7095, DOI:10.1093/nar/gks385.
• Coombes S, Thul R, Wedgwood KCA. (2012) Nonsmooth dynamics in spiking neuron models, PHYSICA D-NONLINEAR PHENOMENA, volume 241, no. 22, pages 2042-2057, DOI:10.1016/j.physd.2011.05.012. [PDF]
• Krauskopf B, Walker JJ. (2012) Bifurcation Study of a Semiconductor Laser with Saturable Absorber and Delayed Optical Feedback, pages 161-181, DOI:10.1002/9783527639823.ch7.
• Waite EJ, McKenna M, Kershaw Y, Walker JJ, Cho K, Piggins HD, Lightman SL. (2012) Ultradian corticosterone secretion is maintained in the absence of circadian cues, Eur J Neurosci, volume 36, no. 8, pages 3142-3150, DOI:10.1111/j.1460-9568.2012.08213.x. [PDF]
• Wang Y, Goodfellow M, Taylor PN, Baier G. (2012) Phase space approach for modeling of epileptic dynamics, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, volume 85, no. 6, DOI:10.1103/PhysRevE.85.061918.
• Goodfellow M, Schindler K, Baier G. (2012) Self-organised transients in a neural mass model of epileptogenic tissue dynamics, Neuroimage, volume 59, no. 3, pages 2644-2660, DOI:10.1016/j.neuroimage.2011.08.060. [PDF]
• Al-Nuaimi Y, Goodfellow M, Paus R, Baier G. (2012) A prototypic mathematical model of the human hair cycle, J Theor Biol, volume 310, pages 143-159, DOI:10.1016/j.jtbi.2012.05.027. [PDF]
• Goodfellow M, Taylor PN, Wang Y, Garry DJ, Baier G. (2012) Modelling the role of tissue heterogeneity in epileptic rhythms, Eur J Neurosci, volume 36, no. 2, pages 2178-2187, DOI:10.1111/j.1460-9568.2012.08093.x. [PDF]
• Schindler K, Gast H, Goodfellow M, Rummel C. (2012) On seeing the trees and the forest: single-signal and multisignal analysis of periictal intracranial EEG, Epilepsia, volume 53, no. 9, pages 1658-1668, DOI:10.1111/j.1528-1167.2012.03588.x. [PDF]
• Baier G, Goodfellow M, Taylor PN, Wang Y, Garry DJ. (2012) The importance of modeling epileptic seizure dynamics as spatio-temporal patterns, Front Physiol, volume 3, DOI:10.3389/fphys.2012.00281. [PDF]
• Wang Y, Goodfellow M, Taylor PN, Baier G. (2012) Phase space approach for modeling of epileptic dynamics, Phys Rev E Stat Nonlin Soft Matter Phys, volume 85, no. 6 Pt 1, DOI:10.1103/PhysRevE.85.061918. [PDF]
• Gorochowski TE, Matyjaszkiewicz A, Todd T, Oak N, Kowalska K, Reid S, Tsaneva-Atanasova KT, Savery NJ, Grierson CS, di Bernardo M. (2012) BSim: An agent-based tool for modeling bacterial populations in systems and synthetic biology, PLoS ONE, volume 7, no. 8, DOI:10.1371/journal.pone.0042790.
• Tsaneva-Atanasova K, Mina P, Caunt CJ, Armstrong SP, McArdle CA. (2012) Decoding GnRH neurohormone pulse frequency by convergent signalling modules, J R Soc Interface, volume 9, no. 66, pages 170-182, DOI:10.1098/rsif.2011.0215. [PDF]
• Finch AR, Caunt CJ, Perrett RM, Tsaneva-Atanasova K, McArdle CA. (2012) Dual specificity phosphatases 10 and 16 are positive regulators of EGF-stimulated ERK activity: indirect regulation of ERK signals by JNK/p38 selective MAPK phosphatases, Cell Signal, volume 24, no. 5, pages 1002-1011, DOI:10.1016/j.cellsig.2011.12.021. [PDF]
• Tsaneva-Atanasova K, Caunt CJ, Armstrong SP, Perrett RM, McArdle CA. (2012) Decoding neurohormone pulse frequency by convergent signalling modules, Biochem Soc Trans, volume 40, no. 1, pages 273-278, DOI:10.1042/BST20110645. [PDF]
• Nowacki J, Osinga HM, Tsaneva-Atanasova K. (2012) Dynamical systems analysis of spike-adding mechanisms in transient bursts, J Math Neurosci, volume 2, no. 1, DOI:10.1186/2190-8567-2-7. [PDF]
• Galfré E, Pitt SJ, Venturi E, Sitsapesan M, Zaccai NR, Tsaneva-Atanasova K, O'Neill S, Sitsapesan R. (2012) FKBP12 activates the cardiac ryanodine receptor Ca2+-release channel and is antagonised by FKBP12.6, PLoS One, volume 7, no. 2, DOI:10.1371/journal.pone.0031956. [PDF]
• Kusev P, Tsaneva-Atanasova K, van Schaik P, Chater N. (2012) Modeling judgment of sequentially presented categories using weighting and sampling without replacement, Behav Res Methods, volume 44, no. 4, pages 1129-1134, DOI:10.3758/s13428-012-0218-9. [PDF]
• Marten F, Tsaneva-Atanasova K, Giuggioli L. (2012) Bacterial secretion and the role of diffusive and subdiffusive first passage processes, PLoS One, volume 7, no. 8, DOI:10.1371/journal.pone.0041421. [PDF]
• Osinga HM, Sherman A, Tsaneva-Atanasova K. (2012) CROSS-CURRENTS BETWEEN BIOLOGY AND MATHEMATICS: THE CODIMENSION OF PSEUDO-PLATEAU BURSTING, Discrete Contin Dyn Syst Ser A, volume 32, no. 8, pages 2853-2877, DOI:10.3934/dcds.2012.32.2853. [PDF]
• Granqvist E, Wysham D, Hazledine S, Kozlowski W, Sun J, Charpentier M, Martins TV, Haleux P, Tsaneva-Atanasova K, Downie JA. (2012) Buffering capacity explains signal variation in symbiotic calcium oscillations, Plant Physiol, volume 160, no. 4, pages 2300-2310, DOI:10.1104/pp.112.205682. [PDF]
• Petrovic MM, Nowacki J, Olivo V, Tsaneva-Atanasova K, Randall AD, Mellor JR. (2012) Inhibition of post-synaptic Kv7/KCNQ/M channels facilitates long-term potentiation in the hippocampus, PLoS One, volume 7, no. 2, DOI:10.1371/journal.pone.0030402. [PDF]
• Walker JJ, Spiga F, Waite E, Zhao Z, Kershaw Y, Terry JR, Lightman SL. (2012) The origin of glucocorticoid hormone oscillations, PLoS Biol, volume 10, no. 6, DOI:10.1371/journal.pbio.1001341. [PDF]
• Richards DM, Hempel AM, Flärdh K, Buttner MJ, Howard M. (2012) Mechanistic basis of branch-site selection in filamentous bacteria, PLoS Computational Biology, volume 8, no. 3, DOI:10.1371/journal.pcbi.1002423.
• Benjamin O, Fitzgerald TH, Ashwin P, Tsaneva-Atanasova K, Chowdhury F, Richardson MP, Terry JR. (2012) A phenomenological model of seizure initiation suggests network structure may explain seizure frequency in idiopathic generalised epilepsy, J Math Neurosci, volume 2, no. 1, DOI:10.1186/2190-8567-2-1. [PDF]
• Rankin J, Walker JJ, Windle R, Lightman SL, Terry JR. (2012) Characterizing dynamic interactions between ultradian glucocorticoid rhythmicity and acute stress using the phase response curve, PLoS One, volume 7, no. 2, DOI:10.1371/journal.pone.0030978. [PDF]

2011

• Kalam al Azad A, Borisyuk R, Roberts A, Soffe S. (2011) Gradient based spinal cord axogenesis and locomotor connectome of the hatchling Xenopus tadpole, BMC Neuroscience, volume 12, no. Suppl 1, DOI:10.1186/1471-2202-12-s1-o9.
• Nowacki J, Osinga HM, Brown JT, Randall AD, Tsaneva-Atanasova K. (2011) Sensitivity analysis to explain the excitability in a pyramidal neuron with application to Alzheimer’s disease, BMC neuroscience, volume 12, no. Suppl 1, pages P342-P342, DOI:10.1186/1471-2202-12-s1-p342.
• Masud MS, Borisyuk R. (2011) Statistical technique for analysing functional connectivity of multiple spike trains, J Neurosci Methods, volume 196, no. 1, pages 201-219, DOI:10.1016/j.jneumeth.2011.01.003. [PDF]
• Borisyuk R, Al Azad AK, Conte D, Roberts A, Soffe SR. (2011) Modeling the connectome of a simple spinal cord, Front Neuroinform, volume 5, DOI:10.3389/fninf.2011.00020. [PDF]
• Baier G, Goodfellow M, Taylor P, Wang Y. (2011) SPONTANEOUS SPIKE-WAVE DISCHARGES IN SPATIALLY EXTENDED MODELS OF EPILEPTIC DYNAMICS, EPILEPSIA, volume 52, pages 60-60. [PDF]
• Osinga HM, Rankin J. (2011) Two-parameter locus of boundary crisis: Mind the gaps!, Discrete and Continuous Dynamical Systems- Series A, no. SUPPL, pages 1148-1157.
• Rankin J, Desroches M, Krauskopf B, Lowenberg M. (2011) Canard cycles in aircraft ground dynamics, Nonlinear Dynamics, volume 66, no. 4, pages 681-688, DOI:10.1007/s11071-010-9940-y.
• Lin KK, Wedgwood KCA, Coombes S, Young L-S. (2011) Limitations of perturbative techniques in the analysis of rhythms and oscillations. [PDF]
• Goodfellow M, Schindler K, Baier G. (2011) Intermittent spike-wave dynamics in a heterogeneous, spatially extended neural mass model, Neuroimage, volume 55, no. 3, pages 920-932, DOI:10.1016/j.neuroimage.2010.12.074. [PDF]
• Teka W, Tsaneva-Atanasova K, Bertram R, Tabak J. (2011) From plateau to pseudo-plateau bursting: making the transition, Bull Math Biol, volume 73, no. 6, pages 1292-1311, DOI:10.1007/s11538-010-9559-7. [PDF]
• Kusev P, Ayton P, van Schaik P, Tsaneva-Atanasova K, Stewart N, Chater N. (2011) Judgments relative to patterns: how temporal sequence patterns affect judgments and memory, J Exp Psychol Hum Percept Perform, volume 37, no. 6, pages 1874-1886, DOI:10.1037/a0025589. [PDF]
• Szalai R, Tsaneva-Atanasova K, Homer ME, Champneys AR, Kennedy HJ, Cooper NP. (2011) Nonlinear models of development, amplification and compression in the mammalian cochlea, Philos Trans A Math Phys Eng Sci, volume 369, no. 1954, pages 4183-4204, DOI:10.1098/rsta.2011.0192. [PDF]
• Nowacki J, Osinga HM, Brown JT, Randall AD, Tsaneva-Atanasova K. (2011) A unified model of CA1/3 pyramidal cells: an investigation into excitability, Prog Biophys Mol Biol, volume 105, no. 1-2, pages 34-48, DOI:10.1016/j.pbiomolbio.2010.09.020. [PDF]

2010

• Cohen N, Jordan J, Voliotis M. (2010) Preferential duplication graphs, Journal of Applied Probability, volume 47, no. 2, pages 572-585, DOI:10.1017/s0021900200006823.
• Somerville J, Stuart L, Sernagor E, Borisyuk R. (2010) iRaster: a novel information visualization tool to explore spatiotemporal patterns in multiple spike trains, J Neurosci Methods, volume 194, no. 1, pages 158-171, DOI:10.1016/j.jneumeth.2010.09.009. [PDF]
• Rankin J, Krauskopf B, Lowenberg M, Coetzee E. (2010) Operational Parameter Study of Aircraft Dynamics on the Ground, Journal of Computational and Nonlinear Dynamics, volume 5, no. 2, DOI:10.1115/1.4000797.
• Rankin J, Krauskopf B, Lowenberg M, Coetzee E. (2010) Nonlinear Analysis of Lateral Loading During Taxiway Turns, Journal of Guidance, Control, and Dynamics, volume 33, no. 6, pages 1708-1717, DOI:10.2514/1.50626.
• Cohen N, Jordan J, Voliotis M. (2010) Preferential duplication graphs, Journal of Applied Probability, volume 47, no. 2, pages 572-585, DOI:10.1239/jap/1276784910.
• Nowacki J, Mazlan S, Osinga HM, Tsaneva-Atanasova K. (2010) The role of large-conductance Calcium-activated (BK) channels in shaping bursting oscillations of a somatotroph cell model, Physica D: Nonlinear Phenomena, volume 239, no. 9, pages 485-493, DOI:10.1016/j.physd.2009.11.014.
• Osinga HM, Tsaneva-Atanasova KT. (2010) Dynamics of plateau bursting depending on the location of its equilibrium, J Neuroendocrinol, volume 22, no. 12, pages 1301-1314, DOI:10.1111/j.1365-2826.2010.02083.x. [PDF]
• Tsaneva-Atanasova K, Osinga HM, Riess T, Sherman A. (2010) Full system bifurcation analysis of endocrine bursting models, J Theor Biol, volume 264, no. 4, pages 1133-1146, DOI:10.1016/j.jtbi.2010.03.030. [PDF]
• Rackham OJL, Tsaneva-Atanasova K, Ganesh A, Mellor JR. (2010) A Ca-Based Computational Model for NMDA Receptor-Dependent Synaptic Plasticity at Individual Post-Synaptic Spines in the Hippocampus, Front Synaptic Neurosci, volume 2, DOI:10.3389/fnsyn.2010.00031. [PDF]
• Armstrong SP, Caunt CJ, Fowkes RC, Tsaneva-Atanasova K, McArdle CA. (2010) Pulsatile and sustained gonadotropin-releasing hormone (GnRH) receptor signaling: does the ERK signaling pathway decode GnRH pulse frequency?, J Biol Chem, volume 285, no. 32, pages 24360-24371, DOI:10.1074/jbc.M110.115964. [PDF]
• Tsaneva-Atanasova K, Osinga HM, Tabak J, Pedersen MG. (2010) Modeling mechanisms of cell secretion, Acta Biotheor, volume 58, no. 4, pages 315-327, DOI:10.1007/s10441-010-9115-8. [PDF]
• Słowiński P, Krauskopf B, Wieczorek S. (2010) Solution structure and dynamics of a semiconductor laser subject to feedback from two external filters, Proceedings of SPIE - The International Society for Optical Engineering, volume 7720, DOI:10.1117/12.853448.
• Walker JJ, Terry JR, Tsaneva-Atanasova K, Armstrong SP, McArdle CA, Lightman SL. (2010) Encoding and decoding mechanisms of pulsatile hormone secretion, J Neuroendocrinol, volume 22, no. 12, pages 1226-1238, DOI:10.1111/j.1365-2826.2010.02087.x. [PDF]
• Walker JJ, Terry JR, Lightman SL. (2010) Origin of ultradian pulsatility in the hypothalamic-pituitary-adrenal axis, Proc Biol Sci, volume 277, no. 1688, pages 1627-1633, DOI:10.1098/rspb.2009.2148. [PDF]

2009

• Chik D, Borisyuk R. (2009) Spiking neural network models for memorizing sequences with forward and backward recall, BMC Neuroscience, volume 10, no. Suppl 1, DOI:10.1186/1471-2202-10-s1-p211.
• Masud M, Borisyuk R. (2009) Modulated Renewal Process and Statistical Analysis of Multiple Spike-Trains, Frontiers in Neuroinformatics, volume 3, DOI:10.3389/conf.neuro.11.2009.08.003.
• Borisyuk R, Chik D, Kazanovich Y. (2009) Partial synchronization of neural activity and information processing, Proceedings of the International Joint Conference on Neural Networks, pages 367-374, DOI:10.1109/IJCNN.2009.5179070.
• Borisyuk R. (2009) Model of the tadpole spinal cord: The interplay of deterministic and stochastic processes in development of specialised neural circuit, IFAC Proceedings Volumes (IFAC-PapersOnline), volume 2, no. PART 1, pages 16-20, DOI:10.3182/20090622-3-uk-3004.00006.
• Borisyuk R, Chik D, Kazanovich Y, IEEE. (2009) Partial Synchronization of Neural Activity and Information Processing, IJCNN: 2009 INTERNATIONAL JOINT CONFERENCE ON NEURAL NETWORKS, VOLS 1- 6, pages 3399-+. [PDF]
• Borisyuk R, Chik D, Kazanovich Y. (2009) SELECTIVE ATTENTION MODEL OF MOVING OBJECTS, NEURAL NETWORK WORLD, volume 19, no. 5, pages 429-445. [PDF]
• Chik D, Borisyuk R, Kazanovich Y. (2009) Selective attention model with spiking elements, Neural Netw, volume 22, no. 7, pages 890-900, DOI:10.1016/j.neunet.2009.02.002. [PDF]
• Borisyuk R, Chik D, Kazanovich Y. (2009) Visual perception of ambiguous figures: synchronization based neural models, Biol Cybern, volume 100, no. 6, pages 491-504, DOI:10.1007/s00422-009-0301-1. [PDF]
• Borisyuk R, Kazanovich Y, Chik D, Tikhanoff V, Cangelosi A. (2009) A neural model of selective attention and object segmentation in the visual scene: an approach based on partial synchronization and star-like architecture of connections, Neural Netw, volume 22, no. 5-6, pages 707-719, DOI:10.1016/j.neunet.2009.06.047. [PDF]
• Rankin J, Coetzee E, Krauskopf B, Lowenberg M. (2009) Bifurcation and Stability Analysis of Aircraft Turning on the Ground, Journal of Guidance, Control, and Dynamics, volume 32, no. 2, pages 500-511, DOI:10.2514/1.37763.
• Voliotis M, Cohen N, Molina-París C, Liverpool TB. (2009) Backtracking and proofreading in DNA transcription, Physical Review Letters, volume 102, no. 25, DOI:10.1103/PhysRevLett.102.258101.
• Tsaneva-Atanasova K. (2009) A Mathematical Study of Calcium Oscillations and Waves.
• Tsaneva-Atanasova K, Burgo A, Galli T, Holcman D. (2009) Quantifying neurite growth mediated by interactions among secretory vesicles, microtubules, and actin networks, Biophys J, volume 96, no. 3, pages 840-857, DOI:10.1016/j.bpj.2008.10.036. [PDF]
• Armstrong SP, Caunt CJ, Fowkes RC, Tsaneva-Atanasova K, McArdle CA. (2009) Pulsatile and sustained gonadotropin-releasing hormone (GnRH) receptor signaling: does the Ca2+/NFAT signaling pathway decode GnRH pulse frequency?, J Biol Chem, volume 284, no. 51, pages 35746-35757, DOI:10.1074/jbc.M109.063917. [PDF]
• Tsaneva-Atanasova K, Sherman A. (2009) Accounting for near-normal glucose sensitivity in Kir6.2[AAA] transgenic mice, Biophys J, volume 97, no. 9, pages 2409-2418, DOI:10.1016/j.bpj.2009.07.060. [PDF]

2008

• Chik D, Borisyuk R. (2008) Modeling perceptual multi-stability with Hodgkin-Huxley neurons, BMC Neuroscience, volume 9, no. Suppl 1, DOI:10.1186/1471-2202-9-s1-p152.
• Borisyuk R, Chik D, Kazanovich Y. (2008) Selective attention model of moving objects, ARTIFICIAL NEURAL NETWORKS - ICANN 2008, PT II, volume 5164, pages 358-+. [PDF]
• Borisyuk R, Cooke T, Roberts A. (2008) Stochasticity and functionality of neural systems: mathematical modelling of axon growth in the spinal cord of tadpole, Biosystems, volume 93, no. 1-2, pages 101-114, DOI:10.1016/j.biosystems.2008.03.012. [PDF]
• Richards DM. (2008) The one-loop five-graviton amplitude and the effective action, Journal of High Energy Physics, volume 2008, no. 10, pages 042-042, DOI:10.1088/1126-6708/2008/10/042.
• Richards DM. (2008) The one-loopH²R³andH²(∇H)²Rterms in the effective action, Journal of High Energy Physics, volume 2008, no. 10, pages 043-043, DOI:10.1088/1126-6708/2008/10/043.
• Voliotis M, Cohen N, Molina-París C, Liverpool TB. (2008) Fluctuations, pauses, and backtracking in DNA transcription, Biophysical Journal, volume 94, no. 2, pages 334-348, DOI:10.1529/biophysj.107.105767.
• Slowinski P, Krauskopf B, Wieczorek S. (2008) Mode structure of a semiconductor laser with feedback from two external filters, SEMICONDUCTOR LASERS AND LASER DYNAMICS III, volume 6997, DOI:10.1117/12.780576. [PDF]

2007

• Chik D, Borisyuk R. (2007) Modelling selective attention with Hodgkin-Huxley neurons, BMC Neuroscience, volume 8, no. Suppl 2, DOI:10.1186/1471-2202-8-s2-p38.
• Tsaneva-Atanasova K, Azzopardi N, Galli T, Holcman D. (2007) Modeling vesicle trafficking and neurite growth, BIOPHYSICAL JOURNAL, pages 115A-115A. [PDF]
• Borisyuk R, Cooke T. (2007) Metastable states, phase transitions, and persistent neural activity, Biosystems, volume 89, no. 1-3, pages 30-37, DOI:10.1016/j.biosystems.2006.05.008. [PDF]
• Li W-C, Cooke T, Sautois B, Soffe SR, Borisyuk R, Roberts A. (2007) Axon and dendrite geography predict the specificity of synaptic connections in a functioning spinal cord network, Neural Dev, volume 2, DOI:10.1186/1749-8104-2-17. [PDF]
• Borisyuk R, Yousif N. (2007) International symposium: theory and neuroinformatics in research related to deep brain stimulation, Expert Rev Med Devices, volume 4, no. 5, pages 587-589, DOI:10.1586/17434440.4.5.587. [PDF]
• Ong HL, Liu X, Tsaneva-Atanasova K, Singh BB, Bandyopadhyay BC, Swaim WD, Russell JT, Hegde RS, Sherman A, Ambudkar IS. (2007) Relocalization of STIM1 for activation of store-operated Ca(2+) entry is determined by the depletion of subplasma membrane endoplasmic reticulum Ca(2+) store, J Biol Chem, volume 282, no. 16, pages 12176-12185, DOI:10.1074/jbc.M609435200. [PDF]
• Tsaneva-Atanasova K, Sherman A, van Goor F, Stojilkovic SS. (2007) Mechanism of spontaneous and receptor-controlled electrical activity in pituitary somatotrophs: experiments and theory, J Neurophysiol, volume 98, no. 1, pages 131-144, DOI:10.1152/jn.00872.2006. [PDF]

2006

• Bertram R, Sherman A, Nunemaker CS, Luciani DS, Pedersen MG, Zhang M, Tsaneva-Atanasova K, Satin LS. (2006) Evidence that calcium feedback and glycolytic oscillations are both important in pancreatic beta-cells: A computational and experimental study, DIABETES, volume 55, pages A369-A369. [PDF]
• Tsaneva-Atanasova K, Nichols C, Arthur S. (2006) Accounting for near-normal glucose sensitivity in Kir6.2[AAA] transgenic mice, DIABETES, volume 55, pages A371-A371. [PDF]
• Kazanovich Y, Borisyuk R. (2006) An oscillatory neural model of multiple object tracking, Neural Comput, volume 18, no. 6, pages 1413-1440, DOI:10.1162/neco.2006.18.6.1413. [PDF]
• Borisyuk R, Kazanovich Y. (2006) Oscillations and waves in the models of interactive neural populations, Biosystems, volume 86, no. 1-3, pages 53-62, DOI:10.1016/j.biosystems.2006.02.017. [PDF]
• Voliotis M, París CM, Tanniemola LB, Cohen N. (2006) Noise R Us: From gene regulatory networks to WWW, Proceedings of AISB'06: Adaptation in Artificial and Biological Systems, volume 3, pages 167-175.
• Nunemaker CS, Bertram R, Sherman A, Tsaneva-Atanasova K, Daniel CR, Satin LS. (2006) Glucose modulates [Ca2+]i oscillations in pancreatic islets via ionic and glycolytic mechanisms, Biophys J, volume 91, no. 6, pages 2082-2096, DOI:10.1529/biophysj.106.087296. [PDF]
• Tsaneva-Atanasova K, Zimliki CL, Bertram R, Sherman A. (2006) Diffusion of calcium and metabolites in pancreatic islets: killing oscillations with a pitchfork, Biophys J, volume 90, no. 10, pages 3434-3446, DOI:10.1529/biophysj.105.078360. [PDF]
• Sneyd J, Tsaneva-Atanasova K, Reznikov V, Bai Y, Sanderson MJ, Yule DI. (2006) A method for determining the dependence of calcium oscillations on inositol trisphosphate oscillations, Proc Natl Acad Sci U S A, volume 103, no. 6, pages 1675-1680, DOI:10.1073/pnas.0506135103. [PDF]

2005

• Reznikov V, Sneyd J, Tsaneva-Atanasova K, Yule DI. (2005) Dependence of CCK induced Ca-i(2+) oscillations on fluctuations in the cytosolic InsP(3) level, BIOPHYSICAL JOURNAL, volume 88, no. 1, pages 437A-437A. [PDF]
• Nunemaker CS, Zhang M, Bertram R, Sherman A, Tsaneva-Atanasova K, Satin LS. (2005) Mouse beta-cells and islets differ in glucose responsiveness, DIABETES, volume 54, pages A407-A407. [PDF]
• Borisyuk R, Borisyuk G, Rallings C, Thrasher M. (2005) Forecasting the 2005 general election: A neural network approach, British Journal of Politics and International Relations, volume 7, no. 2, pages 199-209, DOI:10.1111/j.1467-856X.2005.00182.x.
• Borisyuk R. (2005) Neural connectivity and dynamical regimes of neural activity in a network of interactive populations, BRAIN, VISION, AND ARTIFICIAL INTELLIGENCE, PROCEEDINGS, volume 3704, pages 39-48. [PDF]
• Kazanovich YB, Borisyuk RM. (2005) An oscillatory neural model for tracking a moving object, MODELING LANGUAGE, COGNITION AND ACTION, volume 16, pages 259-268, DOI:10.1142/9789812701886_0027. [PDF]
• Stuart L, Walter M, Borisyuk R. (2005) The correlation grid: analysis of synchronous spiking in multi-dimensional spike train data and identification of feasible connection architectures, Biosystems, volume 79, no. 1-3, pages 223-233, DOI:10.1016/j.biosystems.2004.09.011. [PDF]
• Tsaneva-Atanasova K, Shuttleworth TJ, Yule DI, Thompson JL, Sneyd J. (2005) Calcium Oscillations and Membrane Transport: The Importance of Two Time Scales, Multiscale Modeling & Simulation, volume 3, no. 2, pages 245-264, DOI:10.1137/030602472.
• Tsaneva-Atanasova K, Yule DI, Sneyd J. (2005) Calcium oscillations in a triplet of pancreatic acinar cells, Biophys J, volume 88, no. 3, pages 1535-1551, DOI:10.1529/biophysj.104.047357. [PDF]

2004

• Borisyuk R, ieee. (2004) Stochastic dynamics and partial synchronization of stimulus-driven neural activity, 2004 IEEE INTERNATIONAL JOINT CONFERENCE ON NEURAL NETWORKS, VOLS 1-4, PROCEEDINGS, pages 3035-3040. [PDF]
• Borisyuk RM. (2004) Simulation of the hippocampal theta rhythm, ZHURNAL VYSSHEI NERVNOI DEYATELNOSTI IMENI I P PAVLOVA, volume 54, no. 1, pages 85-100. [PDF]
• Borisyuk RM, Kazanovich YB. (2004) Designing an oscillatory model of brain cognitive functions, CONNECTIONIST MODELS OF COGNITION AND PERCEPTION II, volume 15, pages 285-294, DOI:10.1142/9789812702784_0027. [PDF]
• Borisyuk RM, Kazanovich YB. (2004) Oscillatory model of attention-guided object selection and novelty detection, Neural Netw, volume 17, no. 7, pages 899-915, DOI:10.1016/j.neunet.2004.03.005. [PDF]
• Borisyuk R, Hoppensteadt F. (2004) A theory of epineuronal memory, Neural Netw, volume 17, no. 10, pages 1427-1436, DOI:10.1016/j.neunet.2004.07.006. [PDF]
• Sneyd J, Tsaneva-Atanasova K, Yule DI, Thompson JL, Shuttleworth TJ. (2004) Control of calcium oscillations by membrane fluxes, Proc Natl Acad Sci U S A, volume 101, no. 5, pages 1392-1396, DOI:10.1073/pnas.0303472101. [PDF]

2003

• Kazanovich Y, Borisyuk R. (2003) Synchronization in oscillator systems with a central element and phase shifts, PROGRESS OF THEORETICAL PHYSICS, volume 110, no. 6, pages 1047-1057, DOI:10.1143/PTP.110.1047. [PDF]
• Walter MA, Stuart LJ, Borisyuk R. (2003) Spike train correlation visualization, SEVENTH INTERNATIONAL CONFERENCE ON INFORMATION VISUALIZATION, PROCEEDINGS, pages 555-560, DOI:10.1109/IV.2003.1218040. [PDF]
• Borisyuk RM, Kazanovich YB. (2003) Oscillatory neural network model of attention focus formation and control, Biosystems, volume 71, no. 1-2, pages 29-38, DOI:10.1016/s0303-2647(03)00107-2. [PDF]
• Sneyd J, Tsaneva-Atanasova K. (2003) Modeling Calcium Waves, Understanding Calcium Dynamics, Springer Berlin Heidelberg, 179-199, DOI:10.1007/978-3-540-44878-5_10. [PDF]
• Sneyd J, Tsaneva-Atanasova K, Bruce JIE, Straub SV, Giovannucci DR, Yule DI. (2003) A model of calcium waves in pancreatic and parotid acinar cells, Biophys J, volume 85, no. 3, pages 1392-1405, DOI:10.1016/S0006-3495(03)74572-X. [PDF]

2002

• Borisyuk R, Bugmann G. (2002) Special issue - Papers presented at the International Workshop on NEURONAL CODING '01 - Plymouth, UK 9-14 September, 2001 - Foreword, BIOSYSTEMS, volume 67, no. 1-3, pages 1-2, article no. PII S0303-2647(02)00057-6, DOI:10.1016/S0303-2647(02)00057-6. [PDF]
• Borisyuk GN, Borisyuk RM, Kazanovich YB, Ivanitskij GR. (2002) Models of neuron dynamics in brain information processing - the developments of 'the decade', Uspekhi Fizicheskikh Nauk, volume 172, no. 10, pages 1189-1215, DOI:10.3367/UFNr.0172.200210d.1189.
• Borisyuk GN, Borisyuk RM, Kazanovich YB, Ivanitskii GR. (2002) Models of neural dynamics in brain information processing - the developments of 'the decade', PHYSICS-USPEKHI, volume 45, no. 10, pages 1073-1095, DOI:10.1070/PU2002v045n10ABEH001143. [PDF]
• Borisyuk R. (2002) Oscillatory activity in the neural networks of spiking elements, Biosystems, volume 67, no. 1-3, pages 3-16, DOI:10.1016/s0303-2647(02)00058-8. [PDF]
• Kazanovich Y, Borisyuk R. (2002) Object selection by an oscillatory neural network, Biosystems, volume 67, no. 1-3, pages 103-111, DOI:10.1016/s0303-2647(02)00068-0. [PDF]
• Stuart L, Walter M, Borisyuk R. (2002) Visualisation of synchronous firing in multi-dimensional spike trains, Biosystems, volume 67, no. 1-3, pages 265-279, DOI:10.1016/s0303-2647(02)00084-9. [PDF]

2001

• Borisyuk R, Borisyuk G, Kazanovich Y. (2001) Temporal structure of neural activity and modelling of information processing in the brain, EMERGENT NEURAL COMPUTATIONAL ARCHITECTURES BASED ON NEUROSCIENCE: TOWARDS NEUROSCIENCE-INSPIRED COMPUTING, volume 2036, pages 237-254. [PDF]
• Borisyuk R. (2001) The puzzle of chaotic neurodynamics, BEHAVIORAL AND BRAIN SCIENCES, volume 24, no. 5, pages 812-+, DOI:10.1017/S0140525X01240096. [PDF]
• Borisyuk R, Denham M, Hoppensteadt F, Kazanovich Y, Vinogradova O. (2001) Oscillatory model of novelty detection, Network, volume 12, no. 1, pages 1-20. [PDF]

2000

• Borisyuk GN, Borisyuk RM, Kazanovich YB. (2000) Temporal Structure of Neural Activity and Models of Information Processing in the Brain, Time and the Brain, 331-350, DOI:10.4324/9780203304570_chapter_13.
• Denham MJ, Borisyuk R. (2000) A computational model of GABAergic mediated theta rhythm production in the septal-hippocampal system and its modulation by ascending brainstem pathways, EUROPEAN JOURNAL OF NEUROSCIENCE, volume 12, pages 161-161. [PDF]
• Borisyuk R. (2000) Encyclopedia of computational neuroscience: The end of the second millennium, BEHAVIORAL AND BRAIN SCIENCES, volume 23, no. 4, pages 534-+, DOI:10.1017/S0140525X00243367. [PDF]
• Borisyuk RM. (2000) Computational modelling of septal pacemaker, EUROPEAN JOURNAL OF NEUROSCIENCE, volume 12, pages 241-241. [PDF]
• Denham MJ, Borisyuk RM. (2000) A model of theta rhythm production in the septal-hippocampal system and its modulation by ascending brain stem pathways, Hippocampus, volume 10, no. 6, pages 698-716, DOI:10.1002/1098-1063(2000)10:6<698::AID-HIPO1008>3.0.CO;2-Z. [PDF]
• Borisyuk R, Denham M, Hoppensteadt F, Kazanovich Y, Vinogradova O. (2000) An oscillatory neural network model of sparse distributed memory and novelty detection, Biosystems, volume 58, no. 1-3, pages 265-272, DOI:10.1016/s0303-2647(00)00131-3. [PDF]

Showing 498 publications from Symplectic.